FC872958

Overview
NameFC872958
Unique NameFC872958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:60..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX3_RAT (Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 4.076e-18
Identity = 51/119 (42.86%), Postives = 66/119 (55.46%), Query Frame = 2 
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y  LK+ C
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-DQYLELNALQEELGPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 156

HSP 2 Score: 24.6386 bits (52), Expect = 4.076e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189
[Close]
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX5_MACFA (Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.079e-18
Identity = 50/119 (42.02%), Postives = 67/119 (56.30%), Query Frame = 2 
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++YD+    ++  + VP  ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG     V+  LK  C
Sbjct:   39 TIYDYEAIALNKNEYVPFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSC 156

HSP 2 Score: 24.6386 bits (52), Expect = 4.079e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189
[Close]
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX8_TETNG (Probable glutathione peroxidase 8 OS=Tetraodon nigroviridis GN=gpx8 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 2 
Query:  290 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            Y F VKD  G+ V L K++GK  L+VNVASR   T SNY  L  L+ +     F +LAFPC QFG  E GS+ + + FA   +   FP F ++ + G    P ++ L
Sbjct:   49 YSFEVKDAKGRTVSLEKYRGKASLVVNVASRSEQTESNYRSLQELHRELGPSHFNVLAFPCAQFGETETGSSRDSEAFAKATYGVTFPFFSRIKIMGSEAEPAFRFL 155
[Close]
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX3_PONPY (Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 5.300e-18
Identity = 51/119 (42.86%), Postives = 66/119 (55.46%), Query Frame = 2 
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y  LK+ C
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 156

HSP 2 Score: 24.6386 bits (52), Expect = 5.300e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189
[Close]
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX3_HYLLA (Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.300e-18
Identity = 51/119 (42.86%), Postives = 66/119 (55.46%), Query Frame = 2 
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y  LK+ C
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 156

HSP 2 Score: 24.6386 bits (52), Expect = 5.300e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189
[Close]
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX3_HUMAN (Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.300e-18
Identity = 51/119 (42.86%), Postives = 66/119 (55.46%), Query Frame = 2 
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y  LK+ C
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 156

HSP 2 Score: 24.6386 bits (52), Expect = 5.300e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189
[Close]
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX6_HUMAN (Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.304e-18
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 2 
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI---KEFAC--TRFKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++Y++    ++G++ +   +F GK +L VNVA+  GL  + Y EL+ L E+ K  G  +LAFPCNQFG QEPG+N EI    ++ C  + F   F +F+K DVNG     V+  LK+ C
Sbjct:   39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156

HSP 2 Score: 24.6386 bits (52), Expect = 5.304e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189
[Close]
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX6_MOUSE (Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.897e-18
Identity = 51/119 (42.86%), Postives = 67/119 (56.30%), Query Frame = 2 
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++Y++    IDG   V   ++ GK +L VNVAS CGLT + Y EL+ L E+ K     +L FPCNQFG QEPG N EI       R    +   F +F+K DVNG N   V+  LK+ C
Sbjct:   39 TVYEYGANTIDGGGFVNFQQYAGKHILFVNVASFCGLT-ATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSC 156

HSP 2 Score: 24.6386 bits (52), Expect = 6.897e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189
[Close]
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_MOUSE (Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.916e-18
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2 
Query:  257 AHATAATEKSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKS 616
            A  +AA + ++Y F+ + + G + V L   +GKVLLI NVAS  G T  +Y+E++ L ++   +G  +L FPCNQFG QE G N EI       R    F+  F +F+K +VNG    P++  L++
Sbjct:    4 ARLSAAAQSTVYAFSARPLTGGEPVSLGSLRGKVLLIENVASLUGTTIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRN 129

HSP 2 Score: 23.483 bits (49), Expect = 6.916e-18
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 3 
Query:  645 VKWNFEKFLSG 677
            + WNFEKFL G
Sbjct:  158 IAWNFEKFLVG 168
[Close]
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX3_CEBAP (Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 8.961e-18
Identity = 50/119 (42.02%), Postives = 66/119 (55.46%), Query Frame = 2 
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++Y++    IDG++  P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G ++L FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y  LK+ C
Sbjct:   39 TIYEYGALTIDGEEYTPFKQYIGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLDLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 156

HSP 2 Score: 24.6386 bits (52), Expect = 8.961e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189
The following BLAST results are available for this feature:
BLAST of FC872958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GPX3_RAT4.076e-1842.86Glutathione peroxidase 3 OS=Rattus norvegicus GN=G... [more]
GPX5_MACFA4.079e-1842.02Epididymal secretory glutathione peroxidase OS=Mac... [more]
GPX8_TETNG5.098e-1841.12Probable glutathione peroxidase 8 OS=Tetraodon nig... [more]
GPX3_PONPY5.300e-1842.86Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3... [more]
GPX3_HYLLA5.300e-1842.86Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 ... [more]
GPX3_HUMAN5.300e-1842.86Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 P... [more]
GPX6_HUMAN5.304e-1840.34Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 P... [more]
GPX6_MOUSE6.897e-1842.86Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 P... [more]
GPX1_MOUSE6.916e-1838.10Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 P... [more]
GPX3_CEBAP8.961e-1842.02Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872958 ID=FC872958; Name=FC872958; organism=Citrus clementina; type=EST; length=678bp
ATTGCAACGCCCTTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTCG
AAGGATATCTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATGC
CCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATTC
AATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGGC
TGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTCC
TTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCAC
CGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGCA
AAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATCT
AATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGATT
TGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGAT
CAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATTT
CCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTTA
CCAGTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAAG
TGGAACTTTGAGAAGTTCTTAAGTGGAC
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