FC872967

Overview
NameFC872967
Unique NameFC872967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9889 contig Ccv1_Contig9889:309..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872967 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.203e-11
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 3
Query:    3 KILFYAWAVTRDPQLWENPESFIPERFIE--NPLDYKGTNYEFTPFGSGRRICPGMNFGIANVELPLAKLLYFFNWQLPPGMQPHELDMTAKFG 278
            KIL  AW +  +P+ W+ PE F PERF+E  + ++  G ++ + PFG GRR CPG+   +  + + + +L+  F    PPG    ++D + K G
Sbjct:  395 KILVNAWFLANNPEHWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGKS--KIDTSEKGG 486          
BLAST of FC872967 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.795e-11
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 3
Query:    3 KILFYAWAVTRDPQLWENPESFIPERFIENP--LDYKGTNYEFTPFGSGRRICPGMNFGIANVELPLAKLLYFFNWQLPPGMQPHELDMTAKFG 278
            KIL  AW +  +P  W+ PE F PERF+E    ++  G ++ + PFG GRR CPG+   +  + + L +L+  F    PPG    +LD   K G
Sbjct:  395 KILVNAWWLANNPANWKRPEEFRPERFLEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQS--KLDTAEKGG 486          
BLAST of FC872967 vs. ExPASy Swiss-Prot
Match: C77A1_SOLME (Cytochrome P450 77A1 (Fragment) OS=Solanum melongena GN=CYP77A1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.795e-11
Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 3
Query:   12 FYAWAVTRDPQLWENPESFIPERFIENPLDYKGTNYE---FTPFGSGRRICPGMNFGIANVELPLAKLLYFFNWQLPPGMQPHELDMTAKFGVV 284
            F+   ++ DP +W +PE F P+RF+    D   T  +     PFG GRRICPG+     +V L LA+++  F W   PG    +     +F VV
Sbjct:  393 FFVHGISHDPNVWSDPEKFDPDRFLSGREDADITGVKEVKMMPFGVGRRICPGLGMATVHVNLMLARMVQEFEWFAYPGNNKVDFSEKLEFTVV 486          
BLAST of FC872967 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.875e-11
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 3
Query:    3 KILFYAWAVTRDPQLWENPESFIPERFIENP--LDYKGTNYEFTPFGSGRRICPGMNFGIANVELPLAKLLYFFNWQLPPGMQPHELD 260
            KIL  AW +  +P  W+ PE F PERF+E    ++  G ++ + PFG GRR CPG+   +  + + + +L+  F    PPG    + D
Sbjct:  395 KILVNAWWLANNPDQWKKPEEFRPERFLEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKIDTD 482          
BLAST of FC872967 vs. ExPASy Swiss-Prot
Match: TCMO_CICAR (Trans-cinnamate 4-monooxygenase OS=Cicer arietinum GN=CYP73A19 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.875e-11
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 3
Query:    3 KILFYAWAVTRDPQLWENPESFIPERFIENP--LDYKGTNYEFTPFGSGRRICPGMNFGIANVELPLAKLLYFFNWQLPPGMQPHELDMTAKFG 278
            KIL  AW +  +P  W+ PE F PERF+E    ++  G ++ + PFG GRR CPG+   +  + + L +L+  F    PPG    ++D   K G
Sbjct:  394 KILVNAWWLANNPAQWKKPEEFRPERFLEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQS--KIDTAEKGG 485          
The following BLAST results are available for this feature:
BLAST of FC872967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
TCMO_CATRO5.203e-1135.11Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
TCMO_GLYEC6.795e-1137.23Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
C77A1_SOLME6.795e-1135.11Cytochrome P450 77A1 (Fragment) OS=Solanum melonge... [more]
TCMO_HELTU8.875e-1135.23Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
TCMO_CICAR8.875e-1136.17Trans-cinnamate 4-monooxygenase OS=Cicer arietinum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DH10FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872967 ID=FC872967; Name=FC872967; organism=Citrus clementina; type=EST; length=553bp
CCAAAATACTTTTCTATGCTTGGGCAGTAACAAGAGATCCCCAACTTTGG
GAGAATCCTGAGAGCTTTATTCCAGAAAGGTTCATAGAAAATCCCTTGGA
TTACAAGGGAACTAACTATGAATTCACACCATTTGGATCAGGAAGAAGGA
TTTGTCCAGGCATGAATTTTGGTATAGCCAATGTAGAGCTTCCATTGGCT
AAACTACTCTACTTCTTTAATTGGCAGCTCCCTCCTGGGATGCAACCACA
TGAACTTGATATGACTGCAAAATTTGGTGTGGTTTGCGGTAGAAAGAATG
ACTTGTTTCTGATTCCTACTCCTTACAATAATATTTCGTGAGGGATGCAA
TGACTTTGTTGTAAGATAAATTGTGCGGCCACATGATACCAATTTATGAT
ATAATGGGTGTAATAAATACAAAAGAAAATGGATCAATCAAAATCCTGTT
TGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAGAATAAAAAAAAAA
AAA
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