FC872973

Overview
NameFC872973
Unique NameFC872973
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD5_ABIGR (Gamma-humulene synthase OS=Abies grandis GN=ag5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 59/229 (25.76%), Postives = 100/229 (43.67%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRK-AWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECL-SPNPFSASFTRASLNT-ARMVPLMYGYDDNQRLPR--LEEYVKSLLFDNLP 674
            WD+  +E LP+ MKI F+     +NE+  +  K  G +    +RK AW     A+L +A+W A+GH+P  +EYL NG  ++                +  + +  I         +    RL DD    + E +D  D S I  Y+ +H + T EDA  H    + +    +N + L   +    S  + S +  AR +  MY   D   +    +++ V+ +L   +P
Sbjct:  365 WDVSLVEGLPDFMKIAFEFWLKTSNELIAEAVKAQGQDMAAYIRKNAWERYLEAYLQDAEWIATGHVPTFDEYLNNGTPNTGMCVLNLIPLLLMGEHLPIDILEQIFLPSRFHHLIELASRLVDDARDFQAE-KDHGDLSCIECYLKDHPESTVEDALNHVNGLLGNCLLEMNWKFLKKQDSVPLSCKKYSFHVLARSIQFMYNQGDGFSISNKVIKDQVQKVLIVPVP 592          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 54/221 (24.43%), Postives = 91/221 (41.18%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDN--QRLPRLEEYVKSLL 659
            W +  ++ LPE MK  +K   D   E+   + KE   +  +  ++         + EAKW   GH+P  EE+    I++                  T E+V    S PP+      + R  +DL + K E +  +  S +  YM E+ +V  E AQ     ++ D WK +N+E L+          A +   + + + Y   DN  +     +  +KSLL
Sbjct:  321 WSITCLDTLPEYMKPIYKLFMDTYTEMEEFLAKEGRTDLFNCGKEFVKEFVRNLMVEAKWANEGHIPTTEEHDPVVIITGGANLLTTTCYLGMSDIFTKESVEWAVSAPPLFRYSGILGRRLNDLMTHKAEQERKHSSSSLESYMKEY-NVNEEYAQTLIYKEVEDVWKDINREYLTTKNIPRPLLMAVIYLCQFLEVQYAGKDNFTRMGDEYKHLIKSLL 540          
The following BLAST results are available for this feature:
BLAST of FC872973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TPSD5_ABIGR3.578e-1325.76Gamma-humulene synthase OS=Abies grandis GN=ag5 PE... [more]
AMS1_ARTAN4.373e-1124.43Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BA07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872973 ID=FC872973; Name=FC872973; organism=Citrus clementina; type=EST; length=763bp
GATGGGATCTTGGGGGCATTGAACAACTGCCGGAGTGCATGAAGATATGC
TTCAAGGCTCTGAACGATATCACTAATGAAATCAGCAACAAGGTGTATAA
GGAGCATGGGTATAACCCTGTCCACTCCCTGCGAAAGGCGTGGGGAAGTT
TGTGCAACGCGTTTCTGACAGAAGCGAAATGGTTTGCTTCCGGGCACATG
CCTAAGGCTGAAGAGTACTTGAAAAATGGGATTGTTAGCTCAGGGGTACA
CCTGGGACTTGTGCACGTTTTCTTTCTCCTGGGTCATGGCATCACCAGTG
AAACTGTGCGACTCATTGACAGCAACCCGCCCATAGTATCGTCCGTCGCA
ACAATTCTTCGACTTTGGGACGACTTAGGAAGTGCTAAGGATGAAAATCA
AGATGGCAACGATGGATCTTACATATATTACTACATGATGGAGCACCAAG
ACGTAACAGCTGAAGATGCACAAAAGCATGCTACGGATAAGATTTCAGAT
GCATGGAAGCGCCTAAACCAGGAATGCCTCTCCCCAAATCCATTTTCAGC
ATCTTTCACAAGGGCTTCTCTTAACACTGCCAGAATGGTTCCTTTGATGT
ATGGCTATGATGACAATCAGAGGCTTCCGAGACTCGAGGAGTATGTTAAG
TCCCTCCTCTTCGATAATTTGCCTACTCAAGGAGTGTACTAGTTAGTGAT
AAAGCTCCATACCTACGTACGTATACTATGGAAGTTTCTTTAAAAAAAAA
AAAAAAAAAAAAA
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