FC872980

Overview
NameFC872980
Unique NameFC872980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.479e-18
Identity = 57/231 (24.68%), Postives = 114/231 (49.35%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH--LDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI---AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPY----LVDNGSLEDWAADYLSGVQPLQQFVDPTL-SSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            +F   +  + K+   + + L+G+C E     R++V+EY PNG+L + +H+    H  L W +R+ IA+G +  L+ +H++  PP+ H    SS V L    + +++D      +     ++M                 +V++ GV++ E++TGR P+       + +L  WA   L  +  L + VDP+L  ++  + L +  ++I   ++ +P  RP + +I   L+ +
Sbjct:  539 EFLNLVSNVLKLKRGHILELLGYCNEFGQ--RLLVYEYCPNGSLQDALHLDRKLHKKLTWNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLLDGKLSVRVADSGLAYMLPPRPTSQMAGYAAPEVEYGSYTCQSDVFSLGVVMLELLTGRRPFDRTRPRGHQTLAQWAIPRLHDIDALTRMVDPSLHGAYPMKSLSRFADIISRSLQMEPGFRPPISEIVQDLQHM 767          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.850e-18
Identity = 66/255 (25.88%), Postives = 117/255 (45.88%), Query Frame = 3
Query:   48 KDWPKNLE---VQFRK-----KIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE---SEHLDWGMRLRIAMGMA--YCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN--------EIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRL---PYLVDNGSLEDWAADYLSGVQPLQQFVDPTLS---SFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILRE 731
            K W KN E   ++ RK     ++D L  V H+N V L+G C   +    M+++EY PNG+L + +H  +   +   +W    +IA+G+A   C  H H  +P I H  L  S + L  D+ A+++D              +                      ++Y++GV+L E++TG+    P   +  S+ DW    L   + +++ +D ++    S   E+++++  +   C    P  RP MRD+  IL+E
Sbjct:  748 KLWGKNKENGKIRRRKSGVLAEVDVLGNVRHRNIVRLLGCCTNRD--CTMLLYEYMPNGSLDDLLHGGDKTMTAAAEWTALYQIAIGVAQGICYLH-HDCDPVIVHRDLKPSNILLDADFEARVADFGVAKLIQTDESMSVVAGSYGYIAPEYAYTLQVDKKSDIYSYGVILLEIITGKRSVEPEFGEGNSIVDWVRSKLKTKEDVEEVLDKSMGRSCSLIREEMKQMLRIALLCTSRSPTDRPPMRDVLLILQE 999          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.850e-18
Identity = 67/238 (28.15%), Postives = 112/238 (47.06%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDL-----------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLE-----DWAADYLSGVQPLQQFVDPTL-SSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILRE 731
            +F+ +++ L +V+HKN V L+G+C+E E     +++EY  NG L EH+  K     L+W  RL+I +  A  LE++H    PP+ H  + ++ + L E   AKL+D            +  + +                      +VY+FG++L E++T +   LV N S E     +W    L+    +Q  +DP L   +D   + +  EL  SC+     +RPTM  +   L E
Sbjct:  632 EFKAEVELLLRVHHKNLVGLVGYCDEGENLA--LIYEYMANGDLREHMSGKRGGSILNWETRLKIVVESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHLHAKLADFGLSRSFPIEGETHVSTVVAGTPGYLDPEYYRTNWLNEKSDVYSFGIVLLEIITNQ---LVINQSREKPHIAEWVGLMLT-KGDIQNIMDPKLYGDYDSGSVWRAVELAMSCLNPSSARRPTMSQVVIELNE 863          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.850e-18
Identity = 68/252 (26.98%), Postives = 122/252 (48.41%), Query Frame = 3
Query:   51 DWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH-------LDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-----------AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLP--YLVDNG--SLEDWAADYLSGVQPLQQFVDPTLSS-FDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            D  K  + +F  ++  +S++  +N V L+G+C +     R++ +EYAPNG+L + +H ++          L W  R++IA+G A  LE++H+   P I H  + SS + L +D  AK++D    N+             +                    +VY+FGV+L E++TGR P  + +  G  SL  WA   LS    ++Q VD  L++ +  + + K+  +   CV+ + + RP M  +   L+ +
Sbjct:   99 DSSKQPDREFLAQVSMVSRLKDENVVELLGYCVDGG--FRVLAYEYAPNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNILLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLS-EDKVKQCVDARLNTDYPPKAIAKMAAVAALCVQYEADFRPNMSIVVKALQPL 347          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: PAM74_ARATH (Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana GN=PAM74 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.850e-18
Identity = 62/235 (26.38%), Postives = 113/235 (48.09%), Query Frame = 3
Query:   78 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDL-----------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLS-SFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILRE 731
            F+ ++D L +V+H N V+L+G+C+E +     +++E+ P G L +H+  K     ++WG RLRIA+  A  LE++H    PPI H  + ++ + L E   AKL+D            +  + +                      +VY+FG++L E++T + P +  + S   +  W    L+    + + +DP L+  ++   + ++ EL  SC       RP M  +A  L+E
Sbjct:  620 FKAEVDLLLRVHHTNLVSLVGYCDERDHLA--LIYEFLPKGDLRQHLSGKSGGSFINWGNRLRIALEAALGLEYLHSGCTPPIVHRDIKTTNILLDEQLKAKLADFGLSRSFPIGGETHISTVVAGTPGYLDPEYYQTTRLGEKSDVYSFGIVLLEIITNQ-PVIDQSRSKSHISQWVGFELTR-GDITKIMDPNLNGDYESRSVWRVLELAMSCANPSSVNRPNMSQVANELKE 850          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: Y5838_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.641e-18
Identity = 71/253 (28.06%), Postives = 123/253 (48.62%), Query Frame = 3
Query:   69 EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH---LDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSD-------------LSFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVD------------NGSLEDWAADYLSGVQPLQQFVDPT-LSSFDEEQLEKLGELIKSCVRAD-PEKRPTMRDIAAILREI 734
            E +F  ++ TL  V ++N V L+G+C   +   R++++EY  NG L++ +H  + E    LDW  RL+IA+G A  L  +H   NP I H  ++S  + LT ++  K+SD             LS +      +                  +VY+FGV+L E+VTG+    V              G+L +W    LS    LQ+ +D + L +  ++++ K+ ++  +CV  +  ++RPTM ++  +LR I
Sbjct:  340 EKEFDAEMKTLGSVKNRNLVPLLGYCVANKE--RLLMYEYMANGYLYDQLHPADEESFKPLDWPSRLKIAIGTAKGLAWLHHSCNPRIIHRNISSKCILLTAEFEPKISDFGLARLMNPIDTHLSTFVNGEFGDFGYVAPEYSRTMVATPKGDVYSFGVVLLELVTGQKATSVTKVSEEKAEEENFKGNLVEWITK-LSSESKLQEAIDRSLLGNGVDDEIFKVLKVACNCVLPEIAKQRPTMFEVYQLLRAI 589          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: WAKLH_ARATH (Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.641e-18
Identity = 63/237 (26.58%), Postives = 109/237 (45.99%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL--DWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDL----------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDE----EQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            +F  ++  LS++NH+N V L+G C E +    ++V+E+ PNG LFEH+H +  E++   W +RLRIA+ +A  L ++H   + PI H  + S+ + L E Y AK+SD           +    +    +                 +VY+FGV+L E++TG               A Y        +  D   +   +     Q+    ++ + C+     KRP+MR+++  L  I
Sbjct:  487 EFINEVVILSQINHRNIVKLLGCCLETK--VPVLVYEFIPNGNLFEHLHDEFDENIMATWNIRLRIAIDIAGALSYLHSSASSPIYHRDVKSTNIMLDEKYRAKVSDFGTSRTVTVDHTHLTTVVSGTVGYMDPEYFQSSQFTDKSDVYSFGVVLVELITGEKSISFLRSQENRTLATYFILAMKENKLFDIIDARIRDGCMLSQVTATAKVARKCLNLKGRKRPSMREVSMELDSI 721          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: ACCR4_ARATH (Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.641e-18
Identity = 64/239 (26.78%), Postives = 119/239 (49.79%), Query Frame = 3
Query:   78 FRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSD-------------LSFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNG------SLEDWAADYL---SGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAIL 725
            F  +++++S++NHKN V L+GF E+ E   R++V+EY  NG+L +H+H  + + L W  RL IA+  A  ++++H+ + PP+ H  + SS + L   + AK+SD             +S  +  A   +                 +VY+FGV+L E+++G     + N       +L ++   Y+      + L Q + P  + ++ E +  +G L   C+     KRP+M ++ + L
Sbjct:  496 FVNELESMSRLNHKNLVRLLGFYEDTEE--RILVYEYMKNGSLADHLHNPQFDPLSWQTRLMIALDAARGIQYLHEFIVPPVIHRDIKSSNILLDATWTAKVSDFGLSQMGPTEEDDVSHLSLHAAGTLGYIDPEYYKFQQLTTKSDVYSFGVVLLELLSGH--KAIHNNEDENPRNLVEYVVPYILLDEAHRILDQRIPPP-TPYEIEAVAHVGYLAAECLMPCSRKRPSMVEVVSKL 729          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: Y4885_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.979e-18
Identity = 65/229 (28.38%), Postives = 107/229 (46.72%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTEDYAAKLSDL----------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIK---SCVRADPEKRPTMRDIA 716
            +F  +I  L+++ H+N V L GFC         +V+EY   G+L + + +  E++ LDWG R+ +  G+A+ L +M H  +P I H  ++S  + L EDY AK+SD           S W+ +A                     +VY+FGVL  E++ G  P       +   ++        L+   D  L     E  E++ E++K    C+ +DP+ RPTM  I+
Sbjct:  820 EFLNEIRALTEIRHRNVVKLFGFCSHRR--NTFLVYEYMERGSLRKVLENDDEAKKLDWGKRINVVKGVAHALSYMHHDRSPAIVHRDISSGNILLGEDYEAKISDFGTAKLLKPDSSNWSAVA-GTYGYVAPELAYAMKVTEKCDVYSFGVLTLEVIKGEHP----GDLVSTLSSSPPDATLSLKSISDHRLPEPTPEIKEEVLEILKVALLCLHSDPQARPTMLSIS 1041          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: WAKLO_ARATH (Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.979e-18
Identity = 74/256 (28.91%), Postives = 118/256 (46.09%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFC-EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTG------RLPYLVDNGSLEDWAADYLSGVQPLQQFVDP----TLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLS 773
            Q   +I  LS V+H N V L+G C E+ +P   ++V+EY PNGTL EH+       L W +RL +A   A  + ++H  +NPPI H  + S+ + L  D+ +K++D    + + M E                             +VY+FGV+L E++TG        P+   N  L   A D + G   + + +DP     L ++    +  + EL   C+    + RPTM ++A    E+  I   G IP +S
Sbjct:  388 QVMNEIKLLSSVSHPNLVRLLGCCIEQGDP---VLVYEYMPNGTLSEHLQRDRGSGLPWTLRLTVATQTAKAIAYLHSSMNPPIYHRDIKSTNILLDYDFNSKVADFGL-SRLGMTESSHISTAPQGTPGYLDPQYHQCFHLSDKSDVYSFGVVLAEIITGLKVVDFTRPHTEIN--LAALAVDKI-GSGCIDEIIDPILDLDLDAWTLSSIHTVAELAFRCLAFHSDMRPTMTEVA---DELEQIRLSGWIPSMS 633          
The following BLAST results are available for this feature:
BLAST of FC872980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
SUB_ARATH4.479e-1824.68Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
Y5148_ARATH5.850e-1825.88Probable leucine-rich repeat receptor-like protein... [more]
RLK6_ARATH5.850e-1828.15Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
PTI1_SOLLC5.850e-1826.98Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]
PAM74_ARATH5.850e-1826.38Probable LRR receptor-like serine/threonine-protei... [more]
Y5838_ARATH7.641e-1828.06Probably inactive leucine-rich repeat receptor-lik... [more]
WAKLH_ARATH7.641e-1826.58Wall-associated receptor kinase-like 9 OS=Arabidop... [more]
ACCR4_ARATH7.641e-1826.78Serine/threonine-protein kinase-like protein CCR4 ... [more]
Y4885_ARATH9.979e-1828.38Probable LRR receptor-like serine/threonine-protei... [more]
WAKLO_ARATH9.979e-1828.91Wall-associated receptor kinase-like 14 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BB02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872980 ID=FC872980; Name=FC872980; organism=Citrus clementina; type=EST; length=860bp
CTAATGGAGTTGAAATAGCTGTGGCCTCTGTCTCAGTGGCATCTGCCAAG
GATTGGCCTAAGAACTTAGAAGTGCAGTTTAGGAAGAAGATTGACACGTT
ATCAAAAGTGAACCACAAAAATTTTGTCAATCTTATTGGATTTTGTGAAG
AAGAGGAGCCTTTCACCAGAATGATGGTGTTTGAATATGCTCCTAATGGA
ACACTCTTTGAGCATATACACATTAAAGAATCAGAGCATTTGGACTGGGG
AATGAGGTTGCGGATTGCAATGGGTATGGCTTACTGCCTAGAGCATATGC
ATCAGCTGAACCCACCCATAGCCCACAATTACTTGAACTCTTCAGCTGTC
CATCTGACTGAGGACTATGCAGCCAAATTATCAGACTTAAGCTTCTGGAA
TGAGATAGCCATGGCTGAAATGGCAGCAACTAGCAAAAAACTTTCAAGTG
CACCCTCAGCAAGCCTTGAAAGCAACGTGTACAACTTTGGAGTATTATTA
TTTGAAATGGTAACGGGTAGGCTCCCTTATTTGGTGGACAACGGCTCTCT
AGAAGACTGGGCAGCTGATTATTTGAGTGGAGTGCAACCCCTTCAACAAT
TTGTTGATCCAACTTTAAGCTCTTTTGATGAGGAGCAGCTAGAGAAACTT
GGTGAACTGATAAAATCTTGTGTCCGCGCCGACCCAGAAAAAAGACCGAC
AATGAGAGACATTGCCGCAATATTGAGAGAGATAACCGGAATAACACCAG
ATGGAGCAATCCCAAAACTTTCCCCTCTTTGGTGGGCAGAGATTGAGATT
TTATCTACCGAGGGCATCTAGATTATGAATTTTGGATTGCAAGTATGAAA
AGCTTCAAAT
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