FC872994

Overview
NameFC872994
Unique NameFC872994
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.392e-48
Identity = 92/241 (38.17%), Postives = 140/241 (58.09%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQS-SEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            L +++PY   GL +W AI TWV+ Y   +Y + + +++D E+QAW+ E   VGH D R+A WW ++++ ++L+  +T +IW +SA HA++NFGQY Y GY PNRP L R+ IPDE   E    + D  KY+   +P     T   A+V+ LS H+ DE Y+G+RQ  S WT D                  ++I +RNR+   +NR G   + Y+LM P      ++  +T +G+PNS+SI
Sbjct:  691 LVEDYPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWYSESINVGHADHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAP-----SSEPGVTCRGVPNSVSI 926          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.227e-47
Identity = 94/241 (39.00%), Postives = 140/241 (58.09%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQS-SEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            L +++PY   GL +W AI TWV+ Y   +Y + + +K+D E+Q+W+ E   VGH D R+A WW E+++ D+L+  LT LIW +SA HA++NFGQY Y GY PNRP L R+ IPDE   E A  +   +KYY   +P     +   A+V+ LS H+ DE Y+G+RQ  S WT D                  ++I +RN +   +NR G   + Y+L+ P      ++  +T +G+PNS+SI
Sbjct:  684 LIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSESINVGHADLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVP-----SSEPGVTCRGVPNSVSI 919          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.958e-45
Identity = 94/241 (39.00%), Postives = 140/241 (58.09%), Query Frame = 3
Query:    9 QNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHE---LAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            +++P+   GL +W AI TWV+ Y + FY D DSV  DEE+QA+W E+R  GHGDK++A WW +++S ++L   LT ++W ++A HA+VNFGQY + GY PNRP++ R  +P E   +   +   L + D+   +  P +   T+  A+++VLS H++DE YLG  Q+  W  D                    I  RN++ +LKNR G   + Y+LM P      +D  +TG GIPNS SI
Sbjct:  706 EDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKP-----FSDAGVTGMGIPNSTSI 941          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.958e-45
Identity = 94/241 (39.00%), Postives = 140/241 (58.09%), Query Frame = 3
Query:    9 QNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHE---LAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            +++P+   GL +W AI TWV+ Y + FY D DSV  DEE+QA+W E+R  GHGDK++A WW +++S ++L   LT ++W ++A HA+VNFGQY + GY PNRP++ R  +P E   +   +   L + D+   +  P +   T+  A+++VLS H++DE YLG  Q+  W  D                    I  RN++ +LKNR G   + Y+LM P      +D  +TG GIPNS SI
Sbjct:  689 EDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKP-----FSDSGVTGMGIPNSTSI 924          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.341e-45
Identity = 91/239 (38.08%), Postives = 133/239 (55.65%), Query Frame = 3
Query:   12 NFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHE--LAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            ++P+   GL +W AI  WV DY   +Y D++ + SDEE+Q WW E+R +GHGDK++  WW  + ++D+LI  +T + W +S  HA+VNFGQY Y GY PNRPT  R  +P E   +  L E     +K  LK  P +   TL    +++LS H+ DE Y+G++Q + W ++                    I ERN N  LKNR G   + Y+L+ P + +      +TG G+P SISI
Sbjct:  663 DYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEH-----GVTGMGVPYSISI 896          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.363e-45
Identity = 87/240 (36.25%), Postives = 133/240 (55.42%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            L +++PY   GL +W AI  W + Y + +Y  D++V++D E+Q+W+ E  + GH DKR A WW  +++  +L   LT L+W  SA HA++NFGQY   GY PNRP L R+ +P EG  E A L+ D  +++L  LP     T    +++ LS H++DE YLG+R    WT D                  ++I  RN +   +NR G   + Y+LM P +        +T +G+PNS++I
Sbjct:  665 LIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWYAEAVQSGHADKRGAPWWPRLSTPGDLASLLTTLVWLCSAQHAALNFGQYPLGGYIPNRPPLMRRLVPAEGDPEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDEAWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSG-----PGITCRGVPNSVTI 899          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.720e-45
Identity = 90/240 (37.50%), Postives = 134/240 (55.83%), Query Frame = 3
Query:    9 QNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTH--ELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            +++PY   GL +W +I  W  DY   +YK D  V  DEE++AWW+E+R  GH DK++  WW   ++++NL+Q LTI++W +S  HA+VNFGQY YAGY PNRPT+ R+ IP E     E+ + +   ++  L+ LP +       A +++LS H+ DE Y+G+     W  +                    I  RN N   KNR G   + Y+L+ P      ++  +TG+GIPNSISI
Sbjct:  662 KDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKP-----FSEPGVTGRGIPNSISI 896          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.394e-43
Identity = 93/242 (38.43%), Postives = 133/242 (54.96%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSE--WTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            +  ++PY   GL +W AI   V+ Y   FY D  S+ SD E+QAWW EI+  GH DK++  WW ++N+  +L Q LT +IW +S  HA++NFGQY + GY PNRPTL RK IP E   +    + +    +L  LP +   T   A+ E LS H+ DE YL + +  +  W  D+                 + I ERN++ +LKNR G     Y+L+ P + +      +TG+GIPNSISI
Sbjct:  681 VIDDYPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQETDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPH-----GVTGRGIPNSISI 917          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.457e-42
Identity = 89/245 (36.33%), Postives = 131/245 (53.47%), Query Frame = 3
Query:    9 QNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDE-GTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGK------GIPNSISI 722
            +++PY   GL VW AI  W   Y   +Y     +  DEE+QAWW E+R  GH DK++  WW E++S +NL Q L  ++W +S  HA+VNFGQY  AGY PNRPT+ R+ +P E G  ++ + +   +K  L   P ++   +  A++++LS H+SDE Y+G  +   WT D                  +++ E N +   KNR G   + Y L+ P   +   DG  T +      GIPNSISI
Sbjct:  693 EDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDMRDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGD-PTDGDPTDEKMVMEMGIPNSISI 936          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.006e-41
Identity = 85/239 (35.56%), Postives = 127/239 (53.14%), Query Frame = 3
Query:    9 QNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDE-GTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            +++PY   GL VW AI  W  DY + +Y     +  DEE+Q WW E+R  GH DK++  WW E++  ++L+Q L  ++W +SA HA+VNFGQY  AGY PN P++ R+ +P E G  E+       +K +L  LP +    +  A +++LS H SDE Y+G  Q   W  D                  +++ E N++   +NR G   + Y L+ P   N  +   +   GIPNSISI
Sbjct:  694 EDYPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEVRTKGHPDKQDEPWWPELDCHESLVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCEMGPEEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932          
The following BLAST results are available for this feature:
BLAST of FC872994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
LOX4_ARATH9.392e-4838.17Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH1.227e-4739.00Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOXC2_ORYSJ1.958e-4539.00Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ1.958e-4539.00Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX2_ARATH3.341e-4538.08Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ4.363e-4536.25Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX23_HORVU9.720e-4537.50Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ARATH2.394e-4338.43Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX21_HORVU3.457e-4236.33Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU1.006e-4135.56Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2BC08FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872994 ID=FC872994; Name=FC872994; organism=Citrus clementina; type=EST; length=738bp
TTCTCTTCCAAAATTTTCCCTATGGTTTACATGGACTTGATGTATGGCTT
GCCATTATGACATGGGTCAAAGATTATTGCTCCATCTTCTACAAAGATGA
TGATTCTGTCAAGTCTGACGAGGAAATCCAAGCATGGTGGAAAGAAATCC
GAGAAGTAGGTCATGGTGATAAGCGCAATGCGAGCTGGTGGTTTGAAATG
AACTCTCGTGACAACCTAATACAAGCTCTAACTATTCTCATATGGACTTC
GTCAGCCCTTCATGCTTCAGTGAACTTTGGGCAGTATGCATATGCTGGAT
ACCCTCCAAATCGTCCCACACTATGTCGAAAATTCATTCCGGATGAAGGA
ACACACGAATTAGCAGAGTTATTAATTGATTCAGACAAGTACTATCTTAA
AATGCTACCTGAAAGATTTGCGATAACCCTTAGTACTGCATTGGTAGAAG
TCTTATCGCGGCATACATCAGATGAAGTTTACTTGGGGCAGAGGCAATCA
TCAGAATGGACAGATGATCAGGAGGTTTTGCTAAAATTTGAAGAGTTCGG
TGAGAAGTTGAAAGAAATAGAGCAAAAAATCGTGGAGAGGAACAGAAATG
CCAGGCTTAAGAACAGATGGGGACCTGCCAAGATAGCGTACAAACTTATG
CATCCCGATACATCAAACGTCAAAAACGACGGACGCCTCACAGGAAAAGG
GATCCCAAACAGTATATCCATTTAACGCAAGTTCAAGT
back to top