FC872998

Overview
NameFC872998
Unique NameFC872998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_DEHSC (ATP synthase subunit beta OS=Dehalococcoides sp. (strain CBDB1) GN=atpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 59/127 (46.46%), Postives = 84/127 (66.14%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFD-EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            G+V QVIG+VVDV F  + +P +  ALE+   + ++VLEV  H+G   V+ ++   T+GL RG  V++T  P++VPVGR TLGRI N  GE +D +GD+K+E  +PIHR AP   E  +  Q+L TG
Sbjct:    4 GKVIQVIGSVVDVEFSADSMPALFNALEIPRENGKMVLEVQSHVGNNRVKCLSFTPTDGLERGAEVIDTTRPLSVPVGRGTLGRIFNVLGEALDNRGDVKSEKTMPIHRLAPGMDELESSAQVLETG 130          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_DEHSB (ATP synthase subunit beta OS=Dehalococcoides sp. (strain BAV1) GN=atpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 59/127 (46.46%), Postives = 84/127 (66.14%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFD-EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            G+V QVIG+VVDV F  + +P +  ALE+   + ++VLEV  H+G   V+ ++   T+GL RG  V++T  P++VPVGR TLGRI N  GE +D +GD+K+E  +PIHR AP   E  +  Q+L TG
Sbjct:    4 GKVIQVIGSVVDVEFSADSMPALFNALEIPRENGKMVLEVQSHVGNNRVKCLSFTPTDGLERGAEVIDTTRPLSVPVGRGTLGRIFNVLGEALDNRGDVKSEKTMPIHRLAPGMDELESSAQVLETG 130          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_BURA4 (ATP synthase subunit beta OS=Burkholderia ambifaria (strain MC40-6) GN=atpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFD-EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            G++ Q IGAV+DV F  E +P I  AL ++     L LEV Q +G+GVVRTI +  ++GL RG  V NT  PI+VPVG+ TLGRIM+  G PIDE G +++EH   IH++APAF E +   ++L TG
Sbjct:    9 GKIVQCIGAVIDVEFPRESMPKIYDALILDGSE--LTLEVQQQLGDGVVRTICLGASDGLRRGLTVKNTAKPISVPVGKPTLGRIMDVLGRPIDEAGPIESEHTRSIHQKAPAFDELSPSTELLETG 133          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_BACHK (ATP synthase subunit beta OS=Bacillus thuringiensis subsp. konkukian GN=atpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFDEG-LPPILTALEVEDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTG 643
            G+V Q++G VVDV+FD G LP I  AL V+       S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ N  G+ ID  G++  +    PIHR+APAF E +T+ +IL TG
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETG 136          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_BACHD (ATP synthase subunit beta OS=Bacillus halodurans GN=atpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 68/135 (50.37%), Postives = 85/135 (62.96%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFDEG-LPPILTALEVEDHS-------VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTG 643
            G + QV+G VVDVRF  G LP +  AL VE          V + LEVA H+G+  VRTIAM  T+GLVRG  V++TG+ I+VPVG VTLGR+ N  GE ID    +  +    PIHREAP F E +T+ +IL TG
Sbjct:    4 GHITQVMGPVVDVRFQSGQLPELNNALRVEQKGADQNAVDVNVTLEVALHLGDDTVRTIAMGSTDGLVRGTEVVDTGAAISVPVGEVTLGRVFNVLGESIDLDEPIPADAERSPIHREAPKFEELSTKTEILETG 138          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_BACCZ (ATP synthase subunit beta OS=Bacillus cereus (strain ZK / E33L) GN=atpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFDEG-LPPILTALEVEDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTG 643
            G+V Q++G VVDV+FD G LP I  AL V+       S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ N  G+ ID  G++  +    PIHR+APAF E +T+ +IL TG
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETG 136          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_BACC3 (ATP synthase subunit beta OS=Bacillus cereus (strain 03BB102) GN=atpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFDEG-LPPILTALEVEDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTG 643
            G+V Q++G VVDV+FD G LP I  AL V+       S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ N  G+ ID  G++  +    PIHR+APAF E +T+ +IL TG
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETG 136          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_BACC0 (ATP synthase subunit beta OS=Bacillus cereus (strain AH820) GN=atpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFDEG-LPPILTALEVEDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTG 643
            G+V Q++G VVDV+FD G LP I  AL V+       S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ N  G+ ID  G++  +    PIHR+APAF E +T+ +IL TG
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETG 136          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_BACAN (ATP synthase subunit beta OS=Bacillus anthracis GN=atpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFDEG-LPPILTALEVEDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTG 643
            G+V Q++G VVDV+FD G LP I  AL V+       S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ N  G+ ID  G++  +    PIHR+APAF E +T+ +IL TG
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETG 136          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_BACAH (ATP synthase subunit beta OS=Bacillus thuringiensis (strain Al Hakam) GN=atpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFDEG-LPPILTALEVEDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTG 643
            G+V Q++G VVDV+FD G LP I  AL V+       S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ N  G+ ID  G++  +    PIHR+APAF E +T+ +IL TG
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETG 136          
The following BLAST results are available for this feature:
BLAST of FC872998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_DEHSC1.353e-2546.46ATP synthase subunit beta OS=Dehalococcoides sp. (... [more]
ATPB_DEHSB1.353e-2546.46ATP synthase subunit beta OS=Dehalococcoides sp. (... [more]
ATPB_BURA41.353e-2549.61ATP synthase subunit beta OS=Burkholderia ambifari... [more]
ATPB_BACHK1.353e-2549.62ATP synthase subunit beta OS=Bacillus thuringiensi... [more]
ATPB_BACHD1.353e-2550.37ATP synthase subunit beta OS=Bacillus halodurans G... [more]
ATPB_BACCZ1.353e-2549.62ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_BACC31.353e-2549.62ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_BACC01.353e-2549.62ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_BACAN1.353e-2549.62ATP synthase subunit beta OS=Bacillus anthracis GN... [more]
ATPB_BACAH1.353e-2549.62ATP synthase subunit beta OS=Bacillus thuringiensi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872998 ID=FC872998; Name=FC872998; organism=Citrus clementina; type=EST; length=645bp
ACCAATGGCTTCACGTAGACTCCTAACATCTCTCCTTCGCTCATCTGTCC
GCCGATCTCCCTCCAAATCTTCGTTTTCTAACTCATCTGTGTTCTCTCCT
GCCTCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTC
AGAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGA
AGTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACT
GGAAAGGGCTCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGA
TGTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGG
AAGATCACTCGGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAG
GGTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGG
CCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAG
TTACTCTGGGTCGTATTATGAATGACACTGGAGAGCCTATTGATGAGAAA
GGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGC
ATTCGTTGAACAGGCAACTGAACAACAGATTCTAGTCACTGGCAT
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