FC873025

Overview
NameFC873025
Unique NameFC873025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_RHOPB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=ispG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGN--FADRR-AQFQQL 675
            R KT  VMVG+VA+G   PI VQ+MT  DT DVAGTVE+V  +   G++LVRITV  +  A A   I++ L ++    PL+ D H+     L      AE  DK R+NPGN  F ++R +QF  +
Sbjct:   18 RHKTTQVMVGDVAVGGGAPIVVQSMTNTDTADVAGTVEQVAALTRAGSELVRITVDREEAAAAVPHIRDALRKRGITTPLIGDFHYIGHKLLADYPACAEALDKYRINPGNVGFKNKRDSQFADI 142          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_PSEU2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ispG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 642
            RR++R + VG+V +G + PI VQ+MT +DT DVA TV ++ R+   G D+VR++V     A+A   IK  +      +PLVADIHF   +ALRVAE   D +R+NPGN
Sbjct:    9 RRESRKIWVGSVPVGGDAPIAVQSMTNSDTNDVAATVAQINRLEAAGVDIVRVSVPDMDAAEAFGRIKQLV-----KVPLVADIHFDHRIALRVAELGVDCLRINPGN 111          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_PSESM (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas syringae pv. tomato GN=ispG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 642
            RR++R + VG+V +G + PI VQ+MT +DT DVA TV ++ R+   G D+VRI+V     A+A   IK  +      +PLVADIHF   +ALRVAE   D +R+NPGN
Sbjct:    9 RRESRKIWVGSVPVGGDAPIAVQSMTNSDTNDVAATVAQINRLEAAGVDIVRISVPDMDAAEAFGRIKQLV-----KVPLVADIHFDYRIALRVAELGVDCLRINPGN 111          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_PSEF5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ispG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 642
            RR++R + VG+V +G + PI VQ+MT +DT DVA TV ++ R+   G D+VR++V     A+A   IK     +   +PLVADIHF   +ALRVAE   D +R+NPGN
Sbjct:    9 RRESRKIWVGSVPVGGDAPIAVQSMTNSDTNDVAATVAQINRLEAAGVDIVRVSVPDMDAAEAFGRIK-----QQVKVPLVADIHFDYKIALRVAELGVDCLRINPGN 111          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_GEOTN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ispG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  301 ESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGNFADR 654
            E IH   R KTR V VG++ IG  + + +Q+MTT  T DV  TV ++ R+ + G  +VR+    +R ADA  EIK     K  NIPLVADIHF   +AL+  E   DKIR+NPGN   R
Sbjct:    3 EIIH---RSKTRPVRVGSLTIGGNNEVIIQSMTTTKTHDVDATVAQIHRLEEAGCQIVRVACPDERAADAIPEIK-----KRINIPLVADIHFDYKLALKAIEGGVDKIRINPGNIGRR 113          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_SULNB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Sulfurovum sp. (strain NBC37-1) GN=ispG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADR 654
            R  T+ + VG+VA+G + PI VQ+MT +DT+DVA TVE++ R+   GAD+VR+ V    +A A   IK  +     ++PL+ADIHF   +AL  A+  D IR NPGN  ++
Sbjct:    4 RYPTKKIYVGDVAVGGDAPISVQSMTYSDTRDVAATVEQINRLHFAGADMVRVAVPEMEDALALKAIKEQI-----SLPLIADIHFNYRLALEAAKWVDCIRFNPGNIGEK 109          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_PSE14 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ispG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 642
            RR++R + VG+V +G + PI VQ+MT +DT DVA TV ++ R+   G D+VR++V     A+A   IK  +      +PLVADIHF   +ALRVAE   D +R+NPGN
Sbjct:    9 RRESRKIWVGSVPVGGDAPIAVQSMTNSDTNDVAATVAQINRLEAAGVDIVRVSVPDMDAAEAFGRIKQLV-----KVPLVADIHFDYRIALRVAELGVDCLRINPGN 111          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_EXISA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=ispG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 52/119 (43.70%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  301 ESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADR 654
            E +H+++   TR V VGN+ IG  + + +Q+MTT  T DV  TV E+ R+ + G  +VR+    +R ADA  EIK+ +     NIPLV DIHF   +AL+  E   DKIR+NPGN   R
Sbjct:    3 EILHRSL---TRPVRVGNLIIGGSNEVIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVACPDERAADALAEIKSRI-----NIPLVVDIHFDYKLALKAIESGVDKIRINPGNIGRR 113          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_LYSSC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=ispG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAE-CFDKIRVNPGN 642
            R  TR V VGN+ IG  + + +Q+M T  T DV  TV E++R+ + G  +VR+ V  +R ADA  EIK     K  +IPLVADIHF   +AL+  E   DK+R+NPGN
Sbjct:    7 RSNTRPVRVGNLTIGGSNELFIQSMCTTKTHDVEATVAEILRLEEAGCQIVRVAVPDERAADAIAEIK-----KRIHIPLVADIHFDYRLALKAIENGIDKVRINPGN 109          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_CORU7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ispG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFAD 651
            RRKTR +MVG+V +GSEHPI VQ+MTT  T D+  T++++ ++   G D+VR+     R+A+A       ++ K   IP++ADIHF P    +  E     +RVNPGN  +
Sbjct:   19 RRKTRQLMVGDVGVGSEHPISVQSMTTTKTHDINATLQQIAQLTASGCDIVRVACPKPRDAEAL-----PIIAKKSPIPVIADIHFQPRYIFQAIEAGCAAVRVNPGNIKE 124          
The following BLAST results are available for this feature:
BLAST of FC873025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_RHOPB2.787e-1844.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEU22.787e-1846.304-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSESM2.787e-1847.224-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEF52.787e-1846.304-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GEOTN2.787e-1846.224-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SULNB3.641e-1844.144-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSE143.641e-1846.304-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_EXISA3.641e-1843.704-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LYSSC4.755e-1846.304-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CORU74.755e-1841.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873025 ID=FC873025; Name=FC873025; organism=Citrus clementina; type=EST; length=755bp
CACATTTCTCTCTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTA
GGCGTAGTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAGGAAGCCCCCTATTAGTTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGAATGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCAGCTAGAGTACACAGACGATGAGTATCAGA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCATTGGTTGAGAAATGT
AAAAA
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