FC873038

Overview
NameFC873038
Unique NameFC873038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873038 vs. ExPASy Swiss-Prot
Match: DJB11_PONAB (DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 3
Query:    6 FPGEADEAPDTVTGDIVFVLQQKEHLKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 350
            F GE +   D   GD+ F ++  +H  F+R+GDDL+   T+SL E+L GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  224 FIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of FC873038 vs. ExPASy Swiss-Prot
Match: DJB11_HUMAN (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 3
Query:    6 FPGEADEAPDTVTGDIVFVLQQKEHLKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 350
            F GE +   D   GD+ F ++  +H  F+R+GDDL+   T+SL E+L GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  224 FIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of FC873038 vs. ExPASy Swiss-Prot
Match: DJB11_BOVIN (DnaJ homolog subfamily B member 11 OS=Bos taurus GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 3
Query:    6 FPGEADEAPDTVTGDIVFVLQQKEHLKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFP-ESLSPDQCKMLETVL 368
            F GE +   D   GD+ F ++  +H  F+R+GDDL+   T+SL E+L GF   ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP E LS +  + ++ +L
Sbjct:  224 FIGEGEPHVDGEPGDLRFRIKVVKHSIFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLSEEAREGIKQLL 343          
BLAST of FC873038 vs. ExPASy Swiss-Prot
Match: DJB11_CANFA (DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.844e-12
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 3
Query:    6 FPGEADEAPDTVTGDIVFVLQQKEHLKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 350
            F GE +   D   GD+ F ++  +H  F+R+GDDL+   T+SL E+L GF   ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  224 FIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of FC873038 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEBR (DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=dnj-20 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 3
Query:   75 EHLKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCK 350
            E ++F+RKGDDL+   T+SL +AL GF+  I HLDG   ++K Q  +V  P       DEGMP  +    +G L + F V+FP++   D+ K
Sbjct:  273 EGIRFERKGDDLYTNVTISLQDALNGFEMEILHLDGH--MVKVQRDKVTWPGARLRKKDEGMPSMENNNKKGMLIVTFDVEFPKTELTDEQK 362          
The following BLAST results are available for this feature:
BLAST of FC873038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
DJB11_PONAB1.081e-1234.78DnaJ homolog subfamily B member 11 OS=Pongo abelii... [more]
DJB11_HUMAN1.081e-1234.78DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]
DJB11_BOVIN1.081e-1236.07DnaJ homolog subfamily B member 11 OS=Bos taurus G... [more]
DJB11_CANFA1.844e-1234.78DnaJ homolog subfamily B member 11 OS=Canis famili... [more]
DNJ20_CAEBR5.933e-1140.22DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BH05FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873038 ID=FC873038; Name=FC873038; organism=Citrus clementina; type=EST; length=783bp
TTACGTTCCCTGGAGAAGCTGATGAAGCGCCCGACACTGTCACAGGTGAC
ATTGTATTTGTTCTACAACAGAAAGAGCACCTGAAATTTAAGCGAAAGGG
TGATGACCTATTTGTTGAGCACACCCTGTCACTGACAGAAGCTCTCTGTG
GCTTTCAATTTGTAATAACTCATTTGGATGGCCGGCAACTCCTCATCAAA
TCCCAGCCTGGGGAAGTAGTCAAGCCGGACCAATTCAAGGCCATAAATGA
TGAAGGAATGCCTATGTATCAGAGGCCATTTATGAGGGGCAAACTGTACA
TTCATTTCACTGTTGACTTCCCTGAGTCACTGAGCCCAGACCAGTGCAAG
ATGCTGGAGACCGTACTACCTCCAAGGACCTCAGTCCAGCTCACCGATAT
GGAACTGGATGAGTGTGAAGAAACAACCCTGCATGATGTGAACATTGAGG
AGGAAATGCGAAGGAAGCAACAAGCAGCTCAGGAGGCATACGATGAAGAT
GACGATATGCAAGGTGGTGCCCAGAGAGTGCAGTGTGCTCAGCAGTGATG
ATGTAGAAGAAAAGGGGTGGCCTGATTTAGTATTTTCATTGTTTGGGAGA
AAAAGATTCTCAACATATTTATTTTCTGTTATAGGCTTTAGAGGTTCTAG
TTTTGGTTTGTCTGTCTTTATTCTTATGTTTTTCTGATAACTGACTATGT
AATGGAATTCTAGCGTTGCACCTTCAGACTCAATGCTCATAATTAATATT
TTTAGTGTTTAAAAAAAAAAAAAAAAAAAAAAA
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