FC873062

Overview
NameFC873062
Unique NameFC873062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: GHRB_SALTY (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhimurium GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 2 
Query:  350 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 823
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F
Sbjct:   61 LEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLF 218
[Close]
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: GHRB_SALTI (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhi GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 2 
Query:  350 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 823
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F
Sbjct:   61 LEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLF 218
[Close]
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: GHRB_SALPK (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi A (strain AKU_12601) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 2 
Query:  350 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 823
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F
Sbjct:   61 LEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTTETRHLF 218
[Close]
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: GHRB_SALPA (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi A GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 2 
Query:  350 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 823
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F
Sbjct:   61 LEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTTETRHLF 218
[Close]
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: GHRB_SALNS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella newport (strain SL254) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 2 
Query:  350 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 823
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F
Sbjct:   61 LEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLF 218
[Close]
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: GHRB_SALHS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella heidelberg (strain SL476) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 2 
Query:  350 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 823
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F
Sbjct:   61 LEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLF 218
[Close]
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: GHRB_SALG2 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 2 
Query:  350 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 823
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F
Sbjct:   61 LEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLF 218
[Close]
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: GHRB_SALEP (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella enteritidis PT4 (strain P125109) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 2 
Query:  350 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 823
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F
Sbjct:   61 LEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLF 218
[Close]
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: GHRB_SALDC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella dublin (strain CT_02021853) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 2 
Query:  350 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 823
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F
Sbjct:   61 LEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLF 218
[Close]
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: GHRB_SALA4 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella agona (strain SL483) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 2 
Query:  350 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 823
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F
Sbjct:   61 LEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLTTARRVVDVAERVKAGEWTESIGPAWFGIDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLF 218
The following BLAST results are available for this feature:
BLAST of FC873062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
GHRB_SALTY5.013e-1131.25Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALTI5.013e-1131.25Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALPK5.013e-1131.25Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALPA5.013e-1131.25Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALNS5.013e-1131.25Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALHS5.013e-1131.25Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALG25.013e-1131.25Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALEP5.013e-1131.25Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALDC5.013e-1131.25Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALA45.013e-1131.25Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873062 ID=FC873062; Name=FC873062; organism=Citrus clementina; type=EST; length=826bp
TAATTGGGAGATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTT
TTGCTTCGTCGGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTAT
GCTTCTTCTGGAAGTAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGA
ATACGCTTCAATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTG
GTCTGCGTGAATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGAT
GACAAAGAGGGACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCA
CGTCCTCATATCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGA
TTAAGAAGGCCAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCT
GATCATATTGATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGA
AGTTACTGGAAGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAA
TCCTTATTCTTGTCCGTAATTTCTTACCTGGACACCATCAAGTTATCAGT
GGGGAATGGAATGTTGCCGGTGTTGCTTATAGAGCTCATGATCTTGAAGG
AAAGACAGTGGGAACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCC
AACGACTTANACCTTTCAATTGTAACCTCCTTTATCATGACCGGGTGAAG
ATGGATCCTCAATTGGAGAAAGAGACTGGAGCAAAATTTGAGGAGGATCT
AGATACTATGCTTCCCAAATGTGACATAGTTGTTGTCAACACCCCTCTAA
CAGAAAAGACGAGAGGGATGTTTGAC
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