FC873078
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873078 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2) HSP 1 Score: 363.999 bits (933), Expect = 6.359e-100 Identity = 170/255 (66.67%), Postives = 206/255 (80.78%), Query Frame = 2 Query: 50 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 814 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDP+IK NDT+++DL KI +FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++ E KR Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255
BLAST of FC873078 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1) HSP 1 Score: 361.303 bits (926), Expect = 4.122e-99 Identity = 175/255 (68.63%), Postives = 206/255 (80.78%), Query Frame = 2 Query: 50 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 814 MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL REV AILMQR V VDGKVRTD T+PAGFMDV+ + KT ENFRL+YD KGRF +H + DEEA +KL KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL KIT F+KF+ GNIVM TGGRN GRVG I +RE+H+G F+ +HI+DAL ++F TRL NVF IG+G+K +SLPKGKGIKLSI EE R Sbjct: 1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIAEERDAR 255
BLAST of FC873078 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3) HSP 1 Score: 354.755 bits (909), Expect = 3.858e-97 Identity = 167/255 (65.49%), Postives = 203/255 (79.61%), Query Frame = 2 Query: 50 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 814 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQ + +DGKVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDT+++DL KIT FIKFD GN+ MV G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE KR Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
BLAST of FC873078 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3) HSP 1 Score: 350.132 bits (897), Expect = 9.502e-96 Identity = 169/251 (67.33%), Postives = 198/251 (78.88%), Query Frame = 2 Query: 50 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEE 802 MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLILVLRNRLKYALT +EV ILMQR V VDGKVRTD YPAGFMDV+SI KT ENFRLL+D KGRF L + EEAKFKL +V V+ G +GIPY++T DGRTIRYPDP I +DTIK+D+E KIT FI F+V N+ M+ GG N GRVG + +REKH GSF+ +H+ D GH+FATRL NVF IGK S+ +VSLP GKG++ S ++E Sbjct: 1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDE 251
BLAST of FC873078 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1) HSP 1 Score: 345.125 bits (884), Expect = 3.057e-94 Identity = 169/256 (66.02%), Postives = 201/256 (78.52%), Query Frame = 2 Query: 50 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKGKGIKLSIIEEARKR 814 M RG KKHLKRL AP HWML KL G +AP+PS+GPH RE LPL + LRNRL YAL REV AI+MQ+HV V GKVRTD TYPAGFMDV+++ TNE+FRL YD KG+F +H + EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL KI FIKFD G +VMVTGGRN GRVG+I +REK +G F+ +HI+DAL + F TRL NVF IG + KPWVSLPKGKGIKLSI EE +R Sbjct: 1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEERDRR 256
BLAST of FC873078 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 2.122e-87 Identity = 161/253 (63.64%), Postives = 190/253 (75.10%), Query Frame = 2 Query: 56 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 814 RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E IL QR V VDGKVRT +P GFMDVV+I +TNE FR+LYDTKGR+ +H ++ EA FKLCKV+SV+ KG+P + T DGRTIRYPDP +K NDTI ++ KITD +KF+ GN+ VTGGRN GRVGII +RE+ G+ + IHI+D+ GH FATR+ NVF IGKG+K VSLP G GI+LSI EE KR Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKR 254
BLAST of FC873078 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 1.524e-77 Identity = 136/194 (70.10%), Postives = 160/194 (82.47%), Query Frame = 2 Query: 107 LDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA 688 LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA Sbjct: 1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194
BLAST of FC873078 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 2.600e-77 Identity = 143/256 (55.86%), Postives = 186/256 (72.66%), Query Frame = 2 Query: 53 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQR--HVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 814 ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL R+V IL + +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L SL EEAK+KL KV + G IPYI T+D RTIR+P+P IK DT+K DL NKI +F + GN+ + G N GRVGII++ EKH+GSF+ H++DA G+ FATRLGN+F +G+G K ++ LP G G++ +I+EE +++ Sbjct: 1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIELPSGDGVRETILEERKRK 256
BLAST of FC873078 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 1.138e-48 Identity = 103/252 (40.87%), Postives = 157/252 (62.30%), Query Frame = 2 Query: 50 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKP-WVSLPKGKGIKLSIIEE 802 M G + HLKR APK WMLDK GG FA P+SGPHK EC+PL ++ L+YA ++E+ IL ++++ V+G+VRT+ +P G DVVSI KT E+FR+LY+ +F LH + EEA ++L KV + ++ +GIPYI + G +IR+ DP I TIK+ E +K+ ++I ++ V+ G+ RGRVG+I N +G + D G+ F+ + IG+ S+ W++LPK +GI+ S +E+ Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI-NTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGIRQSELEK 250
BLAST of FC873078 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.821e-38 Identity = 94/252 (37.30%), Postives = 140/252 (55.56%), Query Frame = 2 Query: 50 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKG 772 MAR G ++HLK L APK W + + G F KPS GPH +PL++++R+ L YA T RE ++ + H +DG+VR + YP GFMDV+ I T E +R+L F LH + EEA+FKL ++ + G ++ +DGR IR DP K T+K+ + E ++ + +VG++V++ GGRN GRVG I + + + I+DA G + T L VF I +PW+SLP+G Sbjct: 1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLPEG 252 The following BLAST results are available for this feature:
BLAST of FC873078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873078 ID=FC873078; Name=FC873078; organism=Citrus clementina; type=EST; length=880bpback to top |