FC873139

Overview
NameFC873139
Unique NameFC873139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4_COCIM (Probable cysteine protease ATG4 OS=Coccidioides immitis GN=ATG4 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-15
Identity = 56/165 (33.94%), Postives = 74/165 (44.85%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDED 698
            F  DF S+   +YR  F  I  S+                        T+D GWGCM+RS Q L+A AL    LGR WR+  +    +E  E+L LF D+  +PFSIH  +  G  A G   G W GP A  R  EAL+          C+   + +YV+S   D
Sbjct:  105 FLDDFESKFWFTYRSNFPAIPKSRDPDTPLALTLSVRLRSQFLDTHGFTADTGWGCMIRSGQSLLANALSILNLGRDWRRGSK---IKEECELLSLFADNPQAPFSIHRFVDYGASACGKHPGEWFGPSATARCIEALSN--------ECKHTDLNVYVMSDGSD 258          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4_NEUCR (Probable cysteine protease atg-4 OS=Neurospora crassa GN=atg-4 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.440e-15
Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGF-------DPIGDSKIT----------------SDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALA 620
            F  DF SRI ++YR  F       DP   S ++                SD GWGCM+RS Q L+A A+L  RLGR WR+      ++   +I+ LF D   +P+S+HN ++ G  A G   G W GP A  R  +ALA
Sbjct:  171 FLDDFESRIWMTYRTDFALIPRSSDPQASSALSFAMRIKTTFSDLTGFSSDTGWGCMIRSGQSLLANAILIARLGREWRRGTDLDAEK---DIIALFADDPRAPYSLHNFVKYGATACGKYPGEWFGPSATARCIQALA 306          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4D_HUMAN (Cysteine protease ATG4D OS=Homo sapiens GN=ATG4D PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.440e-15
Identity = 45/138 (32.61%), Postives = 66/138 (47.83%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW----------------------------------RKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP 587
            F +DF SR+ ++YR+ F P+    +TSD GWGCMLRS QM++AQ LL H L R W                                  +   +   +R + +I+  F D   +PF +H L++ G++ G  AG W GP
Sbjct:  112 FQRDFVSRLWLTYRRDFPPLPGGCLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWTWAEGMGLGPPELSGSASPSRYHGPARWMPPRWAQGAPELEQERRHRQIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGP 249          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4C_XENLA (Cysteine protease ATG4C OS=Xenopus laevis GN=atg4c PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15
Identity = 52/151 (34.44%), Postives = 65/151 (43.05%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW------------------------------------------RKPLQKPFDREYVEILH-----LFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP 587
            F +DF SRI ++YRK F  I  S  T+D GWGC LR+ QML+AQ LL H LGR W                                          ++PLQ    + Y E LH      F D   + F +H L++ GK  G  AG W GP
Sbjct:   80 FRKDFISRIWLTYRKEFPQIESSSWTTDCGWGCTLRTGQMLLAQGLLVHFLGRDWTWTEALDIFCSESDFWTANTARKLDPSLEKSSPENEEYVSLGKQPLQNSEKKRYSEDLHRKIISWFADYPLAYFGLHQLVKLGKNSGKVAGDWYGP 230          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4_PODAN (Probable cysteine protease ATG4 OS=Podospora anserina GN=ATG4 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 52/138 (37.68%), Postives = 66/138 (47.83%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPI----------------------GDSK-ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEAL 617
            F  DF SRI ++YR GF+ I                      GD    +SD GWGCM+RS Q L+A A+L  R GR WR+      +R   EI+ LF D   +P+SI N +  G  A G   G W GP A  R   +L
Sbjct:  173 FLDDFESRIWMTYRTGFEVIPRSTDPKAAAALSFTMRFKTSFGDQTGFSSDTGWGCMIRSGQSLLANAMLISRAGRAWRRTTNPDIER---EIVCLFADDPRAPYSIQNFVNHGAAACGKYPGEWFGPSATARCIHSL 307          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4_ASPCL (Probable cysteine protease atg4 OS=Aspergillus clavatus GN=atg4 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.146e-15
Identity = 53/142 (37.32%), Postives = 67/142 (47.18%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIG----------------------DSK-ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALARCQ 629
            F  D  SRI I+YR  F PI                       DS+  TSD GWGCM+RS Q L+A A+L   LGR WR+  +     +  ++LH F D   +PFSIH  +Q G  +     G W GP A  R  +AL   Q
Sbjct:   76 FLDDVESRIWITYRSNFTPIPKPPNQEANPAMTLTVHLRSQLMDSQGFTSDTGWGCMIRSGQSLLANAMLILLLGRDWRRGTEA---GKEAQLLHQFADHPEAPFSIHRFVQHGAEFCNKYPGEWFGPSATARCIQALVAQQ 214          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4D_XENLA (Cysteine protease ATG4D OS=Xenopus laevis GN=atg4d PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.146e-15
Identity = 46/146 (31.51%), Postives = 63/146 (43.15%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW------------------RKPLQKPF------------------------DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP 587
            F +DF SR+ ++YR+ F  +  + +T+D GWGCM+RS QML+AQ LL H L R W                    P   P                         D+ +  I+  F D   SPF +H L+  G  +G  AG W GP
Sbjct:   99 FQKDFVSRVWLTYRRDFPALEGTALTTDCGWGCMIRSGQMLLAQGLLLHLLSREWTWSEALYRHFVEMEPIRSSSPPSMPLSSLATGHSAGDYQPHTQCSGAPHGDQVHRNIMRWFSDHPGSPFGLHQLVTLGSIFGKKAGDWYGP 244          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4C_MOUSE (Cysteine protease ATG4C OS=Mus musculus GN=Atg4c PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 52/156 (33.33%), Postives = 68/156 (43.59%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKP----------------LQKPF----------DRE--------------------------YVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP 587
            F +DF SRI ++YR+ F  I  S +T+D GWGC LR+ QML+AQ L+ H LGR W  P                  K F          DRE                          + +I+  FGDS  + F +H L++ GK  G  AG W GP
Sbjct:   79 FRKDFISRIWLTYREEFPQIEASALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALHIENADSDSWTSNTVKKFTASFEASLSGDRELRTPAVSLKETSGKCPDDHTVRNEAYHRKIISWFGDSPVAVFGLHRLIEFGKKSGKKAGDWYGP 234          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4_ASPOR (Probable cysteine protease atg4 OS=Aspergillus oryzae GN=atg4 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14
Identity = 54/165 (32.73%), Postives = 73/165 (44.24%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPI-----------------------GDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDED 698
            F  DF S+I ++YR  F PI                            TSD GWGCM+RS Q L+A A+L   LGR WR+  +     E   +L LF D   +P SIH  ++ G ++ G   G W GP A  R  EAL+          C ++   +YV +   D
Sbjct:   81 FVSDFESKIWMTYRSDFPPIPRLDNDEANHPMTLTVRIRTQLMDPQGFTSDTGWGCMIRSGQSLLANAMLTLCLGRDWRRGDKA---EEEARLLSLFADHPDAPLSIHRFVKYGAESCGKHPGEWFGPSATARCIEALS--------AQCGNIAPRVYVTNDTSD 234          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4_EMENI (Cysteine protease atg4 OS=Emericella nidulans GN=atg4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 49/139 (35.25%), Postives = 66/139 (47.48%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALA 620
            F  DF S+I ++YR  F PI                            TSD GWGCM+RS Q L+A ++    LGR WR+  +     E  ++L LF DS  +PFSIH+ ++ G  + G   G W GP A  R  + LA
Sbjct:   50 FLLDFESKIWMTYRSNFPPIPKDAGQEGSLSLTLGVRLRSQLIDAQGFTSDTGWGCMIRSGQSLLANSMAILLLGRDWRRGERL---EEEGKLLSLFADSPHAPFSIHSFVKHGADFCGKHPGEWFGPTATARCIQGLA 185          
The following BLAST results are available for this feature:
BLAST of FC873139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
ATG4_COCIM1.103e-1533.94Probable cysteine protease ATG4 OS=Coccidioides im... [more]
ATG4_NEUCR1.440e-1537.41Probable cysteine protease atg-4 OS=Neurospora cra... [more]
ATG4D_HUMAN1.440e-1532.61Cysteine protease ATG4D OS=Homo sapiens GN=ATG4D P... [more]
ATG4C_XENLA4.190e-1534.44Cysteine protease ATG4C OS=Xenopus laevis GN=atg4c... [more]
ATG4_PODAN5.472e-1537.68Probable cysteine protease ATG4 OS=Podospora anser... [more]
ATG4_ASPCL7.146e-1537.32Probable cysteine protease atg4 OS=Aspergillus cla... [more]
ATG4D_XENLA7.146e-1531.51Cysteine protease ATG4D OS=Xenopus laevis GN=atg4d... [more]
ATG4C_MOUSE3.547e-1433.33Cysteine protease ATG4C OS=Mus musculus GN=Atg4c P... [more]
ATG4_ASPOR4.632e-1432.73Probable cysteine protease atg4 OS=Aspergillus ory... [more]
ATG4_EMENI1.348e-1335.25Cysteine protease atg4 OS=Emericella nidulans GN=a... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873139 ID=FC873139; Name=FC873139; organism=Citrus clementina; type=EST; length=808bp
GCTTGTTTAATTCTGCTTTCTCAGTCTTTGAAACGTATAGTGAGTCGTCA
GCTAGTGAAAAGAAGGCAGTTCATAATAAAAGTAATGGGTGGACAGCAGC
TGTGAAGAGACTAGTGACTGCTGGCTCAATGAGGAGAATACATGAACGTG
TACTAGGGCCGAGCAGGACTGGAATTTCTAGCTCAACCAGTGACATATGG
CTTCTTGGTGTGTGCCATAAAATTGCACAGGATGAGGCCTTGGGTGATGC
AGCTGGTAACAATGGATTAGCGGAATTCAATCAAGATTTTTCATCAAGAA
TTCTGATTTCATATCGTAAAGGTTTTGATCCTATTGGTGATTCAAAGATT
ACAAGTGATGTAGGCTGGGGTTGCATGCTTCGAAGTAGTCAGATGCTTGT
TGCACAGGCATTGCTTTTTCATCGATTGGGAAGACCTTGGAGAAAACCTT
TGCAGAAGCCATTTGATCGTGAATATGTTGAGATCTTGCACCTTTTTGGT
GATTCTGAGACATCACCTTTCTCCATTCACAATCTTCTTCAAGCTGGAAA
GGCTTATGGCCTTGCAGCTGGATCATGGGTTGGCCCATATGCCATGTGTC
GCTCATGGGAAGCTCTAGCTCGTTGTCAGAGAGCGGAAACTGGCCTTGGA
TGCCAGTCACTTCCAATGGCTATTTATGTTGTTTCAGGTGATGAAGATGG
GGAGCGAGGTGGAGCTCCAGTTGTGTGTATTGACGATGCATCTAGACATT
GTTCTGTGTTTTCAAAAGGTCAAGCTGACTGGACACCAATTCTTCTGCTT
GTTCCCTT
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