FC873194

Overview
NameFC873194
Unique NameFC873194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.551e-23
Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 2
Query:   11 ATTSKNNDEVDGKPGPGA-LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFS-CFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDA 379
            A T K  DE   +   G  L++KVSMDGAPYLRKVDL+    Y EL  AL+ +F+ CF+                 +   D     ++ + YEDKDGD MLVGDVPWEMFI SCK+L+IMKGS+A
Sbjct:  111 AATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFTKCFS-----------------ATASDGCSDGQFAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSEA 218          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 60/119 (50.42%), Postives = 74/119 (62.18%), Query Frame = 2
Query:   59 GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDA--IGLAPRAMEK 409
            G  ++KVSMDG PYLRK+DL +   Y +L+ AL+K+F    IG                 LKD     EYV  YEDKDGDWML GDVPW MF++SCKRL+IMK SDA   GL PR +++
Sbjct:   95 GLGYVKVSMDGVPYLRKMDLGSSQGYDDLAFALDKLFGFRGIGVA---------------LKDG-DNCEYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDATGFGLQPRGVDE 197          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA15_ARATH (Auxin-responsive protein IAA15 OS=Arabidopsis thaliana GN=IAA15 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 2
Query:    2 NSLATTSKNNDEVDGKPGPGAL-------FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 388
            N+  ++   ND++ G P            ++KV++DGA YLRKVDL  Y  YG+L +ALE MF               + +++  ++ +L    E+V TYEDKDGD MLVGDVPW MF++SCKR+++MK  DAIGL
Sbjct:   59 NNYISSMVTNDQLVGWPPVATARKTVRRKYVKVALDGAAYLRKVDLGMYDCYGQLFTALENMF---------------QGIITICRVTELERKGEFVATYEDKDGDLMLVGDVPWMMFVESCKRMRLMKTGDAIGL 179          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.324e-22
Identity = 57/121 (47.11%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   23 KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIG 385
            KNN+E     G    ++KVSMDG PY+RK+DL +  +Y  L + LE +F C  IG           +  E K        EY++ YEDKD DWMLVGDVPW+MF +SCKRL+I+K SDA G
Sbjct:   84 KNNEEASKAIG----YVKVSMDGVPYMRKIDLGSSNSYINLVTVLENLFGCLGIG-----------VAKEGKK------CEYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKRSDATG 183          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.729e-22
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 2
Query:   35 EVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMF---SCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSK 415
            +V+GK   G  FIKV+MDG    RKVDL  +++Y  L+  LE MF   +  T+G       P R          LL GS E+VLTYEDK+GDWMLVGDVPW MFI+S KRL++MK S+A GLA R  E ++
Sbjct:  122 KVNGKVQVG--FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLR----------LLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPNE 240          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA5_ARATH (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   68 FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGS 373
            ++KVS+DGA +LRK+DL  Y  Y +L+SAL+ +F C+                      D L  SE V  YEDKDGDWML GDVPWEMF+ SCKRL+IMK S
Sbjct:   76 YVKVSVDGAAFLRKIDLEMYKCYQDLASALQILFGCYI------------------NFDDTLKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMKRS 159          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 2
Query:   26 NNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSE-YVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLA 391
            N +  D      ++F+KV+MDG P  RK+DL  +  Y  LS+ LE+MF    +G   + E  G     E+ +K L  GS   VLTYEDK+GDWMLVGDVPW MFI S +RL+IMK S+A G A
Sbjct:  124 NKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGS-RTLETDGH---METPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKA 242          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 55/129 (42.64%), Postives = 75/129 (58.14%), Query Frame = 2
Query:    5 SLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 388
            S+   +KN+D    K    ++ +KV+MDG    RKVDL    +Y  L   L+ MF         S+   G + + E+    LL GS EY++TY+DKDGDWMLVGDVPW+MF+ S  RL+IMK S   G+
Sbjct:  132 SVVVAAKNDDACFIKSSRTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVTRSN-TQGYKTIKETCTSKLLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.049e-19
Identity = 50/123 (40.65%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   14 TTSKNNDEVDGKPGPG--ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 376
            ++S  N +   K G     +F+K++MDG P  RKVDL  Y  Y +LS+A++K+F     G   +  A        +   +++ G EY L YED +GD MLVGDVPW+MFI + KRL+++K SD
Sbjct:  100 SSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFR----GLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSD 218          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA18_ORYSJ (Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 57/133 (42.86%), Postives = 78/133 (58.65%), Query Frame = 2
Query:   23 KNNDEVDGKPGPGAL---FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKL-KDLLHGSE-YVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGS----DAIGLAP 394
            + NDE D K  P       +K++MDG P  RKVDL+ Y +Y +LSSA+E++F  F   Q     A   E  +E K+   LL G+  Y L YED DGD ML GD+PW++F+ + KRL++M+ S    D IG  P
Sbjct:  193 RQNDEADDKAKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSELPHDMIGADP 325          
The following BLAST results are available for this feature:
BLAST of FC873194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA24_ORYSJ4.551e-2348.00Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA19_ARATH7.762e-2350.42Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
IAA15_ARATH1.014e-2242.65Auxin-responsive protein IAA15 OS=Arabidopsis thal... [more]
IAA6_ARATH1.324e-2247.11Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]
IAA13_ARATH1.729e-2249.62Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]
IAA5_ARATH9.489e-2150.00Auxin-responsive protein IAA5 OS=Arabidopsis thali... [more]
IAA11_ARATH1.619e-2047.97Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
IAA10_ARATH8.033e-2042.64Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA2_ORYSJ1.049e-1940.65Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA18_ORYSJ5.207e-1942.86Auxin-responsive protein IAA18 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AF04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873194 ID=FC873194; Name=FC873194; organism=Citrus clementina; type=EST; length=725bp
GAATTCATTGGCAACCACTTCAAAGAACAATGATGAAGTAGATGGAAAAC
CAGGTCCTGGTGCTCTTTTTATTAAGGTTAGCATGGACGGGGCTCCTTAT
TTGAGGAAGGTAGATTTGAGAACATACACCAATTATGGGGAACTATCTTC
TGCTCTGGAGAAGATGTTCAGTTGCTTTACAATTGGTCAATGTGGATCAC
ATGAAGCACCAGGGAGGGAAATGCTGAGTGAGAGCAAGTTGAAGGATCTT
TTGCATGGATCAGAATATGTGCTTACATATGAGGACAAGGATGGTGACTG
GATGCTCGTTGGGGATGTGCCGTGGGAGATGTTTATTGATTCATGCAAGC
GATTAAAGATCATGAAAGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCA
ATGGAAAAATCCAAGATCAGGAACTAGTGAATGTCTGTCTGGGATGGGGT
GCCTTCTAGTTCATGCCTTTCATGGGTAGGAGGAGACTGGGTTGATGAAA
AGTTAAAAAGGACAGGATGGCATGGGCAAGATGCAAGTTTGTGGTTTAGT
TGTGTATCCTGTTTGTTTACATGAGGTTTGTGTTACTTTTTTAAGTTTGG
AAGAAGTCTATGTTTATGATATGATTGTTGTAAAACCATGTTGAGATACT
AAGAAAATTAGGATTCGTGGAGTTATATATCTATATAGTGACAGGGATCT
TATAAAAAAAAAAAAAAAAAAAAAA
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