FC873194

Overview
NameFC873194
Unique NameFC873194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA26_ARATH (Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   65 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 376
            +F+K++MDG P  RKVDL  Y +Y +LS  ++K+F      Q    +  G E      +  LL G  E+ LTYED +GD MLVGDVPW+MF+ S KRL+++K S+
Sbjct:  152 MFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQGEE----KPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSE 252          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 53/131 (40.46%), Postives = 74/131 (56.49%), Query Frame = 2
Query:   53 GPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCF-------TIGQCGSHEAPGREMLSESK-LKDLLHGS--EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSK 415
            G  A F+KV+MDG P  RKVDL  +  YGELS+A++++F          T+    +  A G     E + +  LL G   EY L YED +GD MLVGDVPW MFI + +RL++++ SD      RA  + +
Sbjct:   94 GKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSDLNASTIRAGSRKR 224          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 56/133 (42.11%), Postives = 80/133 (60.15%), Query Frame = 2
Query:    5 SLATTSKNNDEV-DGKPGPGAL------FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSES-KLKDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 376
            +LAT+SK + E+ +GK    A       FIK++MDG P  RK+DL  + +Y +LS A++K+F      Q     A  ++   E   +  LL G+ EY L YED +GD +LVGDVPW MF+ S KRL+++K SD
Sbjct:  151 NLATSSKASLELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 2
Query:   59 GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 376
            G +F+K++M G P  RKVDL  + +Y +LS  ++K+F      Q    + P   +  E  +  LL G+ EY LTYED +GD MLVGDVPW+MF+ S KRL+++K S+
Sbjct:  148 GGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQ---RDFPS-SIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE 250          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 2
Query:   71 IKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKL-KDLLHGS-EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 376
            +K++MDG P  RK+DL  Y +Y  LSSA++++F  F   Q     A   +  ++ K+   LL GS EY L YED +GD MLVGDVPW++F+ + KRL++++ S+
Sbjct:  220 VKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA28_ARATH (Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 2
Query:   65 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPR 397
            L++K++M+G P  RKV+L  Y NY +LS A++++FS                   +    DL    +Y L YED +GD +LVGDVPWEMF+ + KRL ++K S A  L+PR
Sbjct:   81 LYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFS-------------------KKDSWDL--NRQYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHAFSLSPR 170          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   59 GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 367
            G+ ++KV+M+G P  RK+DL +   Y +L + L+ MF+   +       A   +M SE           +VLTY DK+GDWM+VGDVPWEMF+ S +RLKI +
Sbjct:   81 GSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILW------AEEEDMCSEKS---------HVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISR 168          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA31_ARATH (Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   62 ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 367
            +LF+KV M+G P  RK+DL  ++ Y  L   L  MF    I  CG+ +                    +VLTYEDKDGDWM+VGD+PW+MF+++ +RLKI +
Sbjct:   72 SLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSII--CGNRDR-----------------KHHVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   59 GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGS 373
            G+ ++KV+M+G P  RK+DL +   Y +L   L+ MF+   +                ++ +D+ +   +VLTY DK+GDWM+VGDVPWEMF+ + +RLKI + +
Sbjct:   83 GSFYVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILW---------------AEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 50/129 (38.76%), Postives = 69/129 (53.49%), Query Frame = 2
Query:    2 NSLATTSKNNDEVDGKPGPG---ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMF-SCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSD 376
            +SL T +   D   G  G G   +LF+KV M+G P  RK+DL     Y  L + L  MF +  T   C       R+        + +H   +VLTYED++GDWM+ GDVPWE+F+ S KRL+I +  D
Sbjct:   80 SSLTTATVTADRGGGGGGHGRRRSLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCH------RQFAVVGMKTNKVH---HVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199          
The following BLAST results are available for this feature:
BLAST of FC873194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA26_ARATH1.515e-1844.76Auxin-responsive protein IAA26 OS=Arabidopsis thal... [more]
IAA16_ORYSJ2.584e-1840.46Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]
IAA7_ORYSJ7.518e-1842.11Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]
IAA18_ARATH2.187e-1743.93Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA6_ORYSJ3.731e-1743.27Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA28_ARATH5.388e-1640.54Auxin-responsive protein IAA28 OS=Arabidopsis thal... [more]
IAA30_ARATH1.200e-1541.75Auxin-responsive protein IAA30 OS=Arabidopsis thal... [more]
IAA31_ARATH2.674e-1541.18Auxin-responsive protein IAA31 OS=Arabidopsis thal... [more]
IAA20_ARATH2.674e-1537.14Auxin-responsive protein IAA20 OS=Arabidopsis thal... [more]
IAA8_ORYSJ7.780e-1538.76Auxin-responsive protein IAA8 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AF04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873194 ID=FC873194; Name=FC873194; organism=Citrus clementina; type=EST; length=725bp
GAATTCATTGGCAACCACTTCAAAGAACAATGATGAAGTAGATGGAAAAC
CAGGTCCTGGTGCTCTTTTTATTAAGGTTAGCATGGACGGGGCTCCTTAT
TTGAGGAAGGTAGATTTGAGAACATACACCAATTATGGGGAACTATCTTC
TGCTCTGGAGAAGATGTTCAGTTGCTTTACAATTGGTCAATGTGGATCAC
ATGAAGCACCAGGGAGGGAAATGCTGAGTGAGAGCAAGTTGAAGGATCTT
TTGCATGGATCAGAATATGTGCTTACATATGAGGACAAGGATGGTGACTG
GATGCTCGTTGGGGATGTGCCGTGGGAGATGTTTATTGATTCATGCAAGC
GATTAAAGATCATGAAAGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCA
ATGGAAAAATCCAAGATCAGGAACTAGTGAATGTCTGTCTGGGATGGGGT
GCCTTCTAGTTCATGCCTTTCATGGGTAGGAGGAGACTGGGTTGATGAAA
AGTTAAAAAGGACAGGATGGCATGGGCAAGATGCAAGTTTGTGGTTTAGT
TGTGTATCCTGTTTGTTTACATGAGGTTTGTGTTACTTTTTTAAGTTTGG
AAGAAGTCTATGTTTATGATATGATTGTTGTAAAACCATGTTGAGATACT
AAGAAAATTAGGATTCGTGGAGTTATATATCTATATAGTGACAGGGATCT
TATAAAAAAAAAAAAAAAAAAAAAA
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