FC873225

Overview
NameFC873225
Unique NameFC873225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length811
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FBRL_ENCCU (rRNA 2'-O-methyltransferase fibrillarin OS=Encephalitozoon cuniculi GN=NOP1 PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.577e-70
Identity = 132/194 (68.04%), Postives = 164/194 (84.54%), Query Frame = 3
Query:  228 KVVVEPH-RHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPAE 806
            KV+VEPH R  GV+I++GKED L+T+NLV G +VY EKR++V  E G KVEYR+WN +RSKLAA ++ G +NI ++PG +VLYLGA+SGTTVSHVSDIVG +GVVYAVEFS RSGRDL+NM+ KR N++PIIEDAR+P++YRMLV +VD IFSDV+QPDQ RI+ALNA YFLK GG   +SIKANC++S VPAE
Sbjct:   46 KVLVEPHPRFPGVYISRGKEDLLLTRNLVPGVSVYGEKRVAVDLE-GMKVEYRVWNAYRSKLAAGIVCGAENIHMEPGSKVLYLGASSGTTVSHVSDIVGKDGVVYAVEFSERSGRDLINMSMKRPNIVPIIEDARYPSRYRMLVPIVDCIFSDVSQPDQTRIVALNAQYFLKEGGGVDVSIKANCVNSAVPAE 238          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FBRL_LEIMA (rRNA 2'-O-methyltransferase fibrillarin OS=Leishmania major PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.381e-66
Identity = 130/196 (66.33%), Postives = 156/196 (79.59%), Query Frame = 3
Query:  225 SKVVVEPHR-HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG--TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPA 803
            +KV+VEPH  H GVFI+K K D+L T N+V G +VY EKRI +    G   K EYR+WNP+RSKLA+A+  GV +I + PG +VLYLG A+GTTVSHVSD+VGP G+VYAVEFSHR GRDLV M+K+R  ++PI+EDAR+P KYRMLV MVD IF DVAQPDQARILALNA  FL+ GGH+VISIKANCIDS + A
Sbjct:   57 AKVIVEPHMLHPGVFISKAKTDSLCTLNMVPGISVYGEKRIELGATQGGDDKKEYRLWNPYRSKLASAIYAGVSSIHMGPGSKVLYLGGATGTTVSHVSDLVGPEGMVYAVEFSHRVGRDLVEMSKRRP-IVPIVEDARYPMKYRMLVPMVDCIFMDVAQPDQARILALNAQAFLQNGGHYVISIKANCIDSTLEA 251          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FBRL_GIALA (rRNA 2'-O-methyltransferase fibrillarin OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.443e-65
Identity = 130/196 (66.33%), Postives = 156/196 (79.59%), Query Frame = 3
Query:  225 SKVVVEPH-RHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPAEA 809
            +K +V+PH +++G+FI+ G+ D LVTK+L  G AVY EKRISV+  + +K+EYR WNPFRSKL AAV   V ++ IKPG +VLYLGAASGTTVSHVSDIVGP G VYAVEFS RSGRDL+ +AK RTNV PII DARHP KYRM+V  VD IFSDVAQPDQARI+A NA Y+LKA G  +ISIKA+ +DS +  EA
Sbjct:   92 AKTMVKPHPKYDGIFISHGRGDVLVTKSLAPGVAVYGEKRISVEGTE-SKIEYREWNPFRSKLGAAVRLNVLDMPIKPGAKVLYLGAASGTTVSHVSDIVGPTGAVYAVEFSQRSGRDLLEVAKARTNVYPIIADARHPYKYRMIVPEVDCIFSDVAQPDQARIVAENARYYLKANGGMLISIKASSVDSTLKPEA 286          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_THEGJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=flpA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.619e-46
Identity = 101/186 (54.30%), Postives = 126/186 (67.74%), Query Frame = 3
Query:  237 VEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            V+ HR  GV+I    +  + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA+L G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G ++ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  FLK+GG+ +IS+K+  ID
Sbjct:    3 VKKHRFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKFEGE-----EYRIWNPSRSKLGAAILNGLKNFPIKPGSTVLYLGIASGTTASHVSDIVGWEGKIFGVEFSPRVLRELVPIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVFLKSGGYGMISVKSRSID 183          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_PYRKO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus kodakaraensis GN=flpA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.033e-46
Identity = 100/186 (53.76%), Postives = 126/186 (67.74%), Query Frame = 3
Query:  237 VEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            V+ HR  GV+I    +  + + TKNLV G+ VY E+ +  + E     EYRIWNP RSKL AA+L G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G V+ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  +LK+GG+ +IS+K+  ID
Sbjct:    3 VKKHRFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVVKFEGE-----EYRIWNPTRSKLGAAILNGLKNFPIKPGSTVLYLGVASGTTASHVSDIVGWEGKVFGVEFSPRVLRELVPLVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVYLKSGGYGMISVKSRSID 183          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAE (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum aerophilum GN=flpA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.755e-45
Identity = 102/196 (52.04%), Postives = 132/196 (67.35%), Query Frame = 3
Query:  231 VVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPA 803
            V V+PH RH GV++ K ++  + + TKNL  G  VY E+ I    +     EYR WNP+RSKLAAA+L G+  + IK G  +LYLGAASGTT SH+SDIVG NG++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA YFLK GGH ++ IKA  ID   PA
Sbjct:    6 VEVKPHERHYGVYVVKFEDGTERIATKNLTPGRRVYGERLIKWGGD-----EYREWNPYRSKLAAAILNGLKLVPIKEGTHILYLGAASGTTPSHISDIVGENGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNADYFLKPGGHVMLVIKAMSIDVTAPA 196          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_THEON (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus onnurineus (strain NA1) GN=flpA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.293e-45
Identity = 99/186 (53.23%), Postives = 126/186 (67.74%), Query Frame = 3
Query:  237 VEPHRHEGV--FIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            ++ H+  GV  FI +   + + TKNLV G+ VY E+ I  + E     EYR+WNP RSKL AA+L G+ +  IKPG  VLYLG ASGTT SHVSDIVG  G V+ VEFS R  R+LV + ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  FLK+GG+ +IS+K+  ID
Sbjct:    3 IKKHKFPGVYVFIDEDGSEKIATKNLVPGQKVYGERLIKFEGE-----EYRVWNPRRSKLGAAILNGLKHFPIKPGSTVLYLGVASGTTASHVSDIVGWEGKVFGVEFSPRVLRELVPIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVFLKSGGYGMISVKSRSID 183          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_PYRFU (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus furiosus GN=flpA PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.911e-45
Identity = 98/188 (52.13%), Postives = 127/188 (67.55%), Query Frame = 3
Query:  231 VVVEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            V V+ H+  GV++    +  + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G +Y +EFS R  R+LV + ++R N+IPI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID
Sbjct:    2 VEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSID 184          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_THESM (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=flpA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.138e-44
Identity = 97/186 (52.15%), Postives = 126/186 (67.74%), Query Frame = 3
Query:  237 VEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            V+ H+  GV+  I     + + TKNLV G+ VY E+ +  + E     EYRIWNP RSKLAAA+L  + N  IKPG  VLYLG ASGTT SHVSDI+G  G ++ +EFS R  R+LV + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK+GG+ +ISIK+  ID
Sbjct:    3 VKKHKFPGVYTVIEDDGSERIATKNLVPGQKVYGERIVKWKGE-----EYRIWNPNRSKLAAAILNDLKNFPIKPGTTVLYLGIASGTTASHVSDIIGWEGKIFGIEFSPRVLRELVPLVEERRNIVPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKSGGYGMISIKSRSID 183          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAB (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus abyssi GN=flpA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.941e-44
Identity = 95/188 (50.53%), Postives = 126/188 (67.02%), Query Frame = 3
Query:  231 VVVEPHRHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            V V+ H+  GV+I    +  + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSD++G  G ++ +EFS R  R+LV + + R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID
Sbjct:    2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPHRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDVIGWEGKIFGIEFSPRVLRELVPIVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRSID 184          
The following BLAST results are available for this feature:
BLAST of FC873225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FBRL_ENCCU1.577e-7068.04rRNA 2'-O-methyltransferase fibrillarin OS=Encepha... [more]
FBRL_LEIMA1.381e-6666.33rRNA 2'-O-methyltransferase fibrillarin OS=Leishma... [more]
FBRL_GIALA4.443e-6566.33rRNA 2'-O-methyltransferase fibrillarin OS=Giardia... [more]
FLPA_THEGJ4.619e-4654.30Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRKO6.033e-4653.76Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAE1.755e-4552.04Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEON2.293e-4553.23Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRFU3.911e-4552.13Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THESM1.138e-4452.15Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAB1.941e-4450.53Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873225 ID=FC873225; Name=FC873225; organism=Citrus clementina; type=EST; length=811bp
CTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAGAGGACGCGGT
GGTGGCGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAGGAAGAGGAAG
AGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGTAGCGCTATGA
GAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGGAAGAGGACGC
GGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTGAGCCTCATAG
ACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCCTTGTCACTA
AGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGGATCTCCGTC
CAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAATCCCTTCCG
TTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATATTTGGATTA
AACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGCACAACTGTC
TCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTATGCAGTGGA
ATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAAAGAAGAGAA
CCAATGTTATACCCATAATTGAAGATGCTAGACATCCTGCCAAGTACCGT
ATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTGCCCAACCGGA
TCAGGCGAGGATTTTAGCCCTGAATGCATCATATTTTCTCAAAGCTGGAG
GTCATTTTGTTATTTCTATCAAGGCAAACTGCATAGATTCCCCTGTTCCT
GCTGAGGCAGT
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