FC873225

Overview
NameFC873225
Unique NameFC873225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length811
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_PYRHO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus horikoshii GN=flpA PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.535e-44
Identity = 97/188 (51.60%), Postives = 126/188 (67.02%), Query Frame = 3
Query:  231 VVVEPHRHEGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            V V+ H+  GV+  I     + + TKNLV G+ VY E+ I  + E     EYRIWNP RSKL AA++ G+ N  IKPG  VLYLG ASGTT SHVSDIVG  G ++ +EFS R  R+LV + ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID
Sbjct:    2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGE-----EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSID 184          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_PYRIL (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=flpA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.146e-43
Identity = 99/197 (50.25%), Postives = 133/197 (67.51%), Query Frame = 3
Query:  234 VVEPHRHE---GVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPA 803
            VV+  +HE   GV++ K ++  + L TKNL  G+ VY E+ I  ++E     EYR WNP+RSKLAAA++ G+  I I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID   PA
Sbjct:    5 VVDVRKHEHHFGVYVVKFEDGTERLATKNLTPGKRVYGERLIKWRDE-----EYREWNPYRSKLAAAIVNGIKFIPIQEGTHMLYLGAASGTTPSHISDIVGERGLIYSVEFSPRVFREFIEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPA 196          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_PYRCJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=flpA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.780e-43
Identity = 98/196 (50.00%), Postives = 130/196 (66.33%), Query Frame = 3
Query:  231 VVVEPHR-HEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPA 803
            V V PH  H GV++ + ++  + L T+NL  G  VY E+ I  +      VEYR WNP+RSKLAAA+L G+  + I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NVIPI+ DAR P +Y   +  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID   PA
Sbjct:    6 VEVRPHELHYGVYVVRFEDGTERLATRNLTPGRRVYGERLIKWEG-----VEYREWNPYRSKLAAAILNGLKLVPIREGTHMLYLGAASGTTPSHISDIVGERGLIYSVEFSPRVFREFMEKLVDQGRRNVIPILGDARFPYQYAHYIKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPA 196          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAR (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=flpA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.391e-42
Identity = 96/196 (48.98%), Postives = 131/196 (66.84%), Query Frame = 3
Query:  231 VVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPA 803
            V V PH RH GV++ + ++  + + TKNL  G+ VY E+ I    +     EYR WNP+RSKLAAA++ G+  + I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   +  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID   PA
Sbjct:    6 VDVRPHERHYGVYVVRFEDGTERIATKNLTPGKRVYGERLIKWGGD-----EYREWNPYRSKLAAAIVNGLKLVPIREGTHMLYLGAASGTTPSHISDIVGEKGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYIKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPA 196          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_AERPE (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Aeropyrum pernix GN=flpA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.391e-42
Identity = 92/187 (49.20%), Postives = 126/187 (67.38%), Query Frame = 3
Query:  234 VVEPHRHEGVFIAKGKEDAL--VTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            V E  R  GV++ + ++ +L   TKNLV G+ VY E+      E     EYR WN +RSKLAAA+L G+  + +K G R+LYLG ASGTT SH+SDI+GP G +Y VEF+ R  RDL+ + + R N+ PI+ DAR P KYR LV  VD +++DVAQP+QA I+  NA +FL+ GG+ +++IKA  ID
Sbjct:    7 VREHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGERIFRYNGE-----EYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSID 188          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_THENV (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=flpA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.008e-41
Identity = 97/196 (49.49%), Postives = 127/196 (64.80%), Query Frame = 3
Query:  231 VVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN--MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPA 803
            V V PH RH GV+  K ++  + L T+NL  G+ VY E+ +          EYR WNP+RSKLAAA+  G+  + I+ G  +LYLGAASGTT SH+SDIVG  G++Y+VEFS R  R+ +   + + R NV+PI+ DAR P +Y   V  VDV + DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID   PA
Sbjct:    6 VEVRPHERHFGVYALKFEDGSERLATRNLTPGKRVYGERLVKWGG-----AEYREWNPYRSKLAAAIANGIKFVPIQEGTHILYLGAASGTTPSHMSDIVGERGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVAYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPA 196          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_STAMF (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=flpA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.439e-39
Identity = 91/189 (48.15%), Postives = 126/189 (66.67%), Query Frame = 3
Query:  231 VVVEPH-RHEGVFIAKGKEDA--LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            V ++PH ++ GV+I + ++ +  L TKNLV G  VY E+      E     EYR WN +RSKLA A+  G+    I+ G  +LYLG A+GTT SH+SDIVGP G +++VEF+ R  R+ V +A  R N+ PI+ DAR P +YR LV MVD I++D+AQP+QA I+A NA YFLK  G+ +++IKA  ID
Sbjct:    5 VNIKPHEKYYGVYIVELEDGSVKLATKNLVPGHRVYGERLYRWGGE-----EYREWNLYRSKLAGALANGLAEQPIREGHSILYLGVATGTTASHISDIVGPTGRIFSVEFAPRVMREFVLVADIRKNLYPILGDARKPKEYRHLVEMVDGIYADIAQPEQAAIVADNADYFLKDNGYLLLAIKARSID 188          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_SULIY (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=flpA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.880e-39
Identity = 85/166 (51.20%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSID 187          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_SULIN (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=flpA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.880e-39
Identity = 85/166 (51.20%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSID 187          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_SULIM (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=flpA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.880e-39
Identity = 85/166 (51.20%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSID 187          
The following BLAST results are available for this feature:
BLAST of FC873225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_PYRHO2.535e-4451.60Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRIL2.146e-4350.25Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRCJ4.780e-4350.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAR1.391e-4248.98Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_AERPE1.391e-4249.20Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THENV2.008e-4149.49Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_STAMF1.439e-3948.15Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIY1.880e-3951.20Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIN1.880e-3951.20Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIM1.880e-3951.20Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873225 ID=FC873225; Name=FC873225; organism=Citrus clementina; type=EST; length=811bp
CTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAGAGGACGCGGT
GGTGGCGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAGGAAGAGGAAG
AGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGTAGCGCTATGA
GAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGGAAGAGGACGC
GGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTGAGCCTCATAG
ACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCCTTGTCACTA
AGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGGATCTCCGTC
CAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAATCCCTTCCG
TTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATATTTGGATTA
AACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGCACAACTGTC
TCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTATGCAGTGGA
ATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAAAGAAGAGAA
CCAATGTTATACCCATAATTGAAGATGCTAGACATCCTGCCAAGTACCGT
ATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTGCCCAACCGGA
TCAGGCGAGGATTTTAGCCCTGAATGCATCATATTTTCTCAAAGCTGGAG
GTCATTTTGTTATTTCTATCAAGGCAAACTGCATAGATTCCCCTGTTCCT
GCTGAGGCAGT
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