FC873225

Overview
NameFC873225
Unique NameFC873225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length811
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_SULIL (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=flpA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.880e-39
Identity = 85/166 (51.20%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSID 187          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_SULIK (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=flpA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.880e-39
Identity = 85/166 (51.20%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSID 187          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_SULIA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.16.27) GN=flpA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.880e-39
Identity = 85/166 (51.20%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            L T+NLV+G  VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID
Sbjct:   27 LCTRNLVSGFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSID 187          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_METMA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina mazei GN=flpA PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.188e-39
Identity = 95/179 (53.07%), Postives = 116/179 (64.80%), Query Frame = 3
Query:  255 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDS 791
            EG+F     +  L T NL  G+ VY EK ISV+ +     EYR W+P RSKL A VL   D I +K   +VLYLGAASGTTVSHVSDIV   G VY+VEF+ RS RD + +A +R N+ PI+ DA  P  Y  +V  VDVIF DVAQP+QA I A NA  FLK  G+ ++SIKA  ID+
Sbjct:    9 EGIFEVTKDKKQLSTLNLDPGKVVYGEKLISVEGD-----EYRTWDPRRSKLGAMVLKKFD-IPLKRNSKVLYLGAASGTTVSHVSDIVS-EGAVYSVEFAPRSMRDFIGLASRRKNIFPILADAGKPDSYAHIVEPVDVIFQDVAQPNQAEIAARNAVRFLKKDGYLLLSIKARSIDT 180          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_METBF (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=flpA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.188e-39
Identity = 96/179 (53.63%), Postives = 117/179 (65.36%), Query Frame = 3
Query:  255 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDS 791
            +G+F     +  L TKNL  G+ VY EK I+V+      VEYR W+P RSKL A VL    NI +    +VLYLGAASGTTVSHVSDIV   G VYAVEF+ RS RDL+ +A +R N+ PI+ DA  P  Y  LV  VD+IF DVAQP+QA I A NA  FLK  G+ ++SIKA  ID+
Sbjct:    9 DGIFEVIKDKKQLATKNLDPGKTVYGEKLIAVEG-----VEYRTWDPRRSKLGAMVLKKF-NIPLTKNSKVLYLGAASGTTVSHVSDIVS-EGAVYAVEFAPRSMRDLIGLASRRKNIHPILADAGKPDSYSHLVEPVDLIFQDVAQPNQAEIAARNAVRFLKREGYLLLSIKARSIDT 180          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_METVS (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=flpA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.469e-39
Identity = 86/166 (51.81%), Postives = 114/166 (68.67%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            + TK+L  G+ VY EK I  +N+     EYRIWNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHVSDI   + +VYAVEF+ R  R+ ++   +R N+IPI+ DA  P +Y  +VG VDVIF DVAQP+QA IL  NA +FL   G+ +ISIKA  ID
Sbjct:   25 IATKSLAPGKRVYGEKLIYSENK-----EYRIWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVSDI-SEDTIVYAVEFAPRIMREFIDSCNERINLIPILGDANRPFEYSNIVGKVDVIFEDVAQPNQAEILVKNAKWFLNKDGYAMISIKARSID 184          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_NANEQ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Nanoarchaeum equitans GN=flpA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.329e-39
Identity = 86/186 (46.24%), Postives = 116/186 (62.37%), Query Frame = 3
Query:  231 VVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            + V+PH+ EGV+I   K   L+TKNLV G+ VY E+    + E     EYR W PFRSKLA+A+  G+     K G  VLYLG ASGTT SH+SDI+G  G+++ VEF+ R  R+L+ +AKKR N++PI+ DA  P  Y+ +V   DVI+ DVAQP Q  I   N  +F K      +++KA  ID
Sbjct:    7 IKVKPHKLEGVYIGNNK--FLLTKNLVKGQKVYTERIFKSKGE-----EYREWIPFRSKLASAIKKGLKTWPFKKGTIVLYLGIASGTTASHISDIIGEEGIIFGVEFAPRVLRELMFVAKKRKNIVPILADANQPETYQHIVVQSDVIYQDVAQPHQVEIFLKNLRFFAKPNAIGFLAVKARSID 185          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_METKA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanopyrus kandleri GN=flpA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.329e-39
Identity = 86/190 (45.26%), Postives = 122/190 (64.21%), Query Frame = 3
Query:  228 KVVVEPHRH-EGVF--IAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            ++ +EPH   EGV+  I +       T+NLV G  VY E+ +    +     EYR+W P RSKLAA ++ G++    + G +VLYLGAA+GTT SHVSDI+  +GV Y VEF+ R  ++L+ + +KR N+IPI+ DA  P  Y  LV  VDVI+ D+AQP QA ++A NA  FL+ GG+ +++IKA  ID
Sbjct:    3 EIEIEPHEEFEGVYWAIFEDGRKKPATENLVPGHQVYGERLVEYDGK-----EYRVWEPRRSKLAAMIMNGMEYFPFEEGSKVLYLGAAAGTTPSHVSDIIKESGVEYCVEFASRMMQELIPVCEKRPNMIPILGDATKPHGYAPLVEQVDVIYQDIAQPKQAEVVADNAEAFLRPGGYVIVAIKARSID 187          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_METM5 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=flpA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.078e-38
Identity = 81/166 (48.80%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            + TK+L+ G+ VY EK +   N     +EYR+WNP +SKL AA++ G+  + IK G +VLYLGA++GTT SHV+DI   N +VYA+EF+ R  R+ ++   +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D
Sbjct:   25 IATKSLIPGKRVYGEKLVYSDN-----IEYRVWNPNKSKLGAAIINGLKKMPIKKGTKVLYLGASAGTTPSHVADIA-ENSLVYALEFAPRIMREFIDSCNERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVD 184          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_SULSO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus solfataricus GN=flpA PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.714e-38
Identity = 84/166 (50.60%), Postives = 109/166 (65.66%), Query Frame = 3
Query:  291 LVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            L T+NLV    VY E+ I  +      VEYR WN FRSKLA A+L G+    I+ G +VLYLGAASGTT+SHVSDI+  NG  Y VEFS R  R+L+ +A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G  ++ IKA  ID
Sbjct:   27 LCTRNLVPNFNVYGERLIKYEG-----VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSID 187          
The following BLAST results are available for this feature:
BLAST of FC873225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_SULIL1.880e-3951.20Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIK1.880e-3951.20Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIA1.880e-3951.20Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMA4.188e-3953.07Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METBF4.188e-3953.63Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METVS5.469e-3951.81Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_NANEQ9.329e-3946.24Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METKA9.329e-3945.26Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM52.078e-3848.80Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULSO2.714e-3850.60Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873225 ID=FC873225; Name=FC873225; organism=Citrus clementina; type=EST; length=811bp
CTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAGAGGACGCGGT
GGTGGCGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAGGAAGAGGAAG
AGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGTAGCGCTATGA
GAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGGAAGAGGACGC
GGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTGAGCCTCATAG
ACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCCTTGTCACTA
AGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGGATCTCCGTC
CAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAATCCCTTCCG
TTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATATTTGGATTA
AACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGCACAACTGTC
TCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTATGCAGTGGA
ATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAAAGAAGAGAA
CCAATGTTATACCCATAATTGAAGATGCTAGACATCCTGCCAAGTACCGT
ATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTGCCCAACCGGA
TCAGGCGAGGATTTTAGCCCTGAATGCATCATATTTTCTCAAAGCTGGAG
GTCATTTTGTTATTTCTATCAAGGCAAACTGCATAGATTCCCCTGTTCCT
GCTGAGGCAGT
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