FC873225

Overview
NameFC873225
Unique NameFC873225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length811
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_METTH (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanobacterium thermoautotrophicum GN=flpA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.485e-33
Identity = 81/178 (45.51%), Postives = 110/178 (61.80%), Query Frame = 3
Query:  255 EGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            +GVFI     ++L+T N   G  VY E+ I     D    EYR+W+P RSKLAAA+L G+    +    RVLYLGA++GTT SH+SDIV  +G VY +EFS R  R+L+ + + R N+ P++EDA  P  Y  +V   D+++ DVAQPDQ R+   N   FLK  G+ +I IKA  ID
Sbjct:   11 DGVFIMN---NSLLTINPNPGVKVYGERII-----DWGGREYRVWDPRRSKLAAAILNGLRGFSLNSDSRVLYLGASAGTTASHISDIV-TDGRVYCIEFSPRMMRELLGVCESRKNMAPLLEDASRPLSYLRMVEAADLVYCDVAQPDQTRLFIENMDCFLKRDGYGLIMIKARSID 179          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_ARCFU (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Archaeoglobus fulgidus GN=flpA PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.721e-30
Identity = 80/175 (45.71%), Postives = 107/175 (61.14%), Query Frame = 3
Query:  282 EDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPAE 806
            +D LVTK+       Y EK       DG    YR W P+RSKLAA +L G   + ++   RVLYLGAASGTTVSH++DIV   G++YAVE+S +    L+ + ++R N+IP++ DA  P KY  +V  VD+I+ D+AQ +Q  IL  NA +FLK  G  VI +KA  IDS    E
Sbjct:   12 DDTLVTKSKYGSH--YGEKVF-----DG----YREWVPWRSKLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPE 173          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_METMJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=flpA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.701e-29
Identity = 68/138 (49.28%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  378 YRIWNPFRSKLAAA-VLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID 788
            YR+W+P+RSKLAA   LGG   + + P +RVLYLGAA+GTTVSHV+D V     VYAVEF+ R  +DL+ +A++R N++PI+ DA  P +Y   +  VD+++ DVAQP+Q  I   N   FLK GGH V+ +K   +D
Sbjct:   25 YRVWDPYRSKLAALYTLGG--GVELTPEMRVLYLGAANGTTVSHVADYVE---TVYAVEFAPRPMQDLLEVARRRRNIVPIMADASRPEEYAPFMEAVDLVYQDVAQPNQVEIAERNL-VFLKPGGHLVLMLKTRSVD 156          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_METTP (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=flpA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.143e-28
Identity = 74/158 (46.84%), Postives = 103/158 (65.19%), Query Frame = 3
Query:  318 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDS 791
            E +Y EK +     DG     R+W+P RSKLAA +L       + P  +VLYLGAA+GTTVS++ DI+   G++YAVE S R+ RDL+ +A++R N+IP++ DA  P  YR +V  VD+++ DVAQ +QA I + NAS +LK  G  V+ IKA  IDS
Sbjct:   24 EPLYGEKIV-----DGL----RVWDPRRSKLAALLLRYPCLEGVVPSGKVLYLGAANGTTVSYLGDIL-TGGMIYAVEISPRAMRDLLLLAEQRENIIPVLGDAARPETYRRIVEPVDLLYQDVAQRNQAEIASRNASIYLKPNGLMVVMIKARSIDS 171          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_THEVO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermoplasma volcanium GN=flpA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.057e-26
Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = 3
Query:  321 AVYNEKRIS--VQNEDGTKVE---YRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKA 776
            +VY E      V  E+ TK+    YR W+P RSK AAA+L G+    I+    VLYLGA++GTT+SH+SDI  P G +Y VE S+     L+++AKKR N+ PI+EDA  P KY   +  VDV++ D++Q +Q +I   N + F    G  V+ I++
Sbjct:   24 SVYTETETPQRVYGEEITKINNRTYREWDPRRSKPAAAILNGLRRFPIRENDSVLYLGASTGTTISHISDIC-PAGTIYGVEVSYEPFSKLLDLAKKRNNLYPILEDANSPEKYSFFIEHVDVMYQDISQRNQIQIFKNNVNTFNPKRGFLVLKIRS 179          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_THEAC (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermoplasma acidophilum GN=flpA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.545e-25
Identity = 69/165 (41.82%), Postives = 98/165 (59.39%), Query Frame = 3
Query:  300 KNLVA-GEAVYNE--KRISVQNEDGTKVE---YRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKA 776
            KN++  G  +Y    K   V  ED  + E   YR W P RSKLAAA+L G+ N+ I     +LYLGA++GTTVSHVSDI  P+G +YAVE ++     L+++A++R N+ PI+EDA  P +YR  V  VDVI+ D++Q +Q  I   N   F       V+  ++
Sbjct:   19 KNMLRIGNKLYTRTSKNKKVYGEDIIRFEHANYREWRPDRSKLAAAILKGLHNMPIGESSSILYLGASTGTTVSHVSDIA-PSGRIYAVEVAYEPFSKLLDLAEQRDNIYPILEDANLPERYRFFVDHVDVIYQDISQRNQIAIFKRNMDEFQPRSAFLVLKTRS 182          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_HALMA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Haloarcula marismortui GN=flpA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.667e-25
Identity = 74/178 (41.57%), Postives = 101/178 (56.74%), Query Frame = 3
Query:  276 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPAEA 809
            G E +L T+    G+ VY E+         T  ++R W+P RSKL A +  G+D   +  G  VLYLGAA+GTTVSHV+D  GP    YAVEF+ R  R+L++ A+ R N+ P+++DAR P  Y  +V  VDV+  DVA   QAR+  LN   FL   G  + +IKA   D     +A
Sbjct:   13 GGETSLATQ----GQPVYGER---------TDGDWRRWDPHRSKLGAMLAHGMDT-GLGGGETVLYLGAAAGTTVSHVADFGGPT---YAVEFAPRPVRELLDAAESRRNLFPLLKDARKPESYAHVVEPVDVVVQDVATRGQARVATLN-KQFLTDDGRLLAAIKARSEDVTADPDA 172          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_METHJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=flpA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.495e-23
Identity = 65/134 (48.51%), Postives = 86/134 (64.18%), Query Frame = 3
Query:  381 RIWNPFRSKLAAAVLGGVDNIWIKPGVR---VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIK 773
            RIW+P  SK+AA       +I  +P VR   +LYLGAA+G+TVS +SD      VVYAVEFS R  R L+ +A+ R N+IP+ EDAR+P +Y   V  VD++  D+AQ DQA I AL    FLK GGH ++ +K
Sbjct:   25 RIWDPGHSKVAALC-----HIHGEPPVRNARILYLGAAAGSTVSFLSDYAE---VVYAVEFSPRPVRSLIRLARARKNIIPLFEDARYPERYLPFVEPVDLLIQDIAQRDQAEI-ALRNLIFLKQGGHLILFLK 149          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_PICTO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Picrophilus torridus GN=flpA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.652e-22
Identity = 63/151 (41.72%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  324 VYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKA 776
            VY EK I  +N        R W+P RSKLAAA+L G  +      + +LYLGA++GTTVSH+SDI   +G +YAVE S+ S   L ++++ R N+ PI+EDA    +Y+  V   D I+ D+AQ +Q +I   NA  F       +I IKA
Sbjct:   25 VYGEKIIRKKNS-----YLREWDPRRSKLAAAILKGFKHANFDKKLNILYLGASTGTTVSHLSDIC-ISGRLYAVELSYDSFVKLYSLSQARNNIFPILEDANLVERYKFFVEKCDFIYQDIAQRNQVQIFNQNADIFKPRSAILIIKIKA 169          
BLAST of FC873225 vs. ExPASy Swiss-Prot
Match: FLPA_HALLT (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=flpA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.309e-21
Identity = 75/178 (42.13%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  276 GKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-GMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSPVPAE 806
            G E  L T+    G  VY E        DG    +R W+P RSKL      G +   +  G  VLYLGAASGTTVSHV+D  GP    YAVEF+ R  RDLV  A+ R  + P+++DAR P +Y  +V   VD I  DVA   QA +   NA  FL   G  +++IKA   D  V  E
Sbjct:   16 GGETRLATR----GPPVYGEP-----TADG----WRAWDPGRSKLGGMFELGFET-GLSGGETVLYLGAASGTTVSHVADFAGPT---YAVEFAPRPARDLVEAAEPRDRLFPLLKDARTPKRYAHVVESDVDAIVQDVATRGQAEVAVRNAR-FLADDGRLLLAIKARSEDVTVEPE 175          
The following BLAST results are available for this feature:
BLAST of FC873225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FLPA_METTH4.485e-3345.51Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_ARCFU2.721e-3045.71Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMJ6.701e-2949.28Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METTP1.143e-2846.84Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEVO9.057e-2642.04Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEAC1.545e-2541.82Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALMA7.667e-2541.57Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METHJ5.495e-2348.51Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PICTO4.652e-2241.72Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALLT2.309e-2142.13Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873225 ID=FC873225; Name=FC873225; organism=Citrus clementina; type=EST; length=811bp
CTTTGTAGCCGGACAGAGCATCAAACATGAGACCTCCAAGAGGACGCGGT
GGTGGCGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAGGAAGAGGAAG
AGGTGGCGGCCGAGGTGGTGGAGGTGGAAGAGGTGGTGGTAGCGCTATGA
GAGGCCGAGGTGGCGGTCGTGGCGGTGGCCGAGGTGGAGGAAGAGGACGC
GGTGGTGGAGGAATGAAGGGTGGAAGCAAGGTTGTAGTTGAGCCTCATAG
ACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCCTTGTCACTA
AGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGGATCTCCGTC
CAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAATCCCTTCCG
TTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATATTTGGATTA
AACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGCACAACTGTC
TCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTATGCAGTGGA
ATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAAAGAAGAGAA
CCAATGTTATACCCATAATTGAAGATGCTAGACATCCTGCCAAGTACCGT
ATGTTGGTCGGTATGGTAGATGTAATATTTTCTGACGTTGCCCAACCGGA
TCAGGCGAGGATTTTAGCCCTGAATGCATCATATTTTCTCAAAGCTGGAG
GTCATTTTGTTATTTCTATCAAGGCAAACTGCATAGATTCCCCTGTTCCT
GCTGAGGCAGT
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