FC873231
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14 Identity = 49/152 (32.24%), Postives = 70/152 (46.05%), Query Frame = 1 Query: 1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 D+ + LP V A RPD++ N QPY S AG +TSA WG+GR VS +PR+ + + A +GGR P K K+N ++RY P+LV RGH E E+P+V + E++E+T Sbjct: 8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRL-----KNSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERT 152
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_HALWD (50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl4p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14 Identity = 48/148 (32.43%), Postives = 68/148 (45.95%), Query Frame = 1 Query: 13 DASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 D + T+ LP V + RPD++ N QPY AG +T AES+G+GR ++ +PR G R Q GR P K + + +N +++ PS V RGH+ E E+PLVVSD E + KT Sbjct: 11 DKADTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPR-ENGQARRVPQAV------SGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSDEFEELIKT 151
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.227e-13 Identity = 50/143 (34.97%), Postives = 68/143 (47.55%), Query Frame = 1 Query: 28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + LP V +A RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ ES+ KT Sbjct: 16 IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKT 152
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METM7 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl4p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13 Identity = 49/143 (34.27%), Postives = 67/143 (46.85%), Query Frame = 1 Query: 28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ ES+ KT Sbjct: 16 IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKT 152
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13 Identity = 45/143 (31.47%), Postives = 69/143 (48.25%), Query Frame = 1 Query: 28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + LP++ + RPD++ + QP+ + AG +TSAESWG+GR +++PR+ G + A GGR P K+ + ++IN +KR P LV RGH E ++PLV D E V +T Sbjct: 16 IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNG-----SRVARVPQATGGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFE--GDLPLVFEDRFEEVTRT 151
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METM6 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl4p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13 Identity = 48/143 (33.57%), Postives = 67/143 (46.85%), Query Frame = 1 Query: 28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN ++ P +V ARGHKIE VP +PLVV+ ES+ KT Sbjct: 16 IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKT 152
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 7.956e-13 Identity = 48/143 (33.57%), Postives = 66/143 (46.15%), Query Frame = 1 Query: 28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ E + KT Sbjct: 16 IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKT 152
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.772e-12 Identity = 46/141 (32.62%), Postives = 66/141 (46.81%), Query Frame = 1 Query: 34 LPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 L V + RPD++ + QP V AG +TSA+S G G +R+ R G GAF GGR P K+ + H ++N ++ +V RGH +ETVP +PL+VSD ES++KT Sbjct: 18 LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGA------GAFVPQAVGGRRCHPPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDFESLKKT 152
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.023e-12 Identity = 48/152 (31.58%), Postives = 68/152 (44.74%), Query Frame = 1 Query: 1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 D+ D + T+ LP V + +RPD+V N Q Y AG +T+AES G+GR ++ +P+ GQGA GGR P K + +N +++ LV RGH + E PLVVSD E + KT Sbjct: 7 DLDGDDAGTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKA-------NGQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKT 151
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.023e-12 Identity = 48/152 (31.58%), Postives = 68/152 (44.74%), Query Frame = 1 Query: 1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 D+ D + T+ LP V + +RPD+V N Q Y AG +T+AES G+GR ++ +P+ GQGA GGR P K + +N +++ LV RGH + E PLVVSD E + KT Sbjct: 7 DLDGDDAGTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKA-------NGQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKT 151 The following BLAST results are available for this feature:
BLAST of FC873231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 42
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873231 ID=FC873231; Name=FC873231; organism=Citrus clementina; type=EST; length=512bpback to top |