FC873231

Overview
NameFC873231
Unique NameFC873231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14
Identity = 49/152 (32.24%), Postives = 70/152 (46.05%), Query Frame = 1
Query:    1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            D+       + LP V  A  RPD++         N  QPY  S  AG +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  E++E+T
Sbjct:    8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRL-----KNSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERT 152          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_HALWD (50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14
Identity = 48/148 (32.43%), Postives = 68/148 (45.95%), Query Frame = 1
Query:   13 DASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            D + T+ LP V +   RPD++         N  QPY     AG +T AES+G+GR ++ +PR   G   R  Q         GR   P K  +   + +N  +++            PS V  RGH+ E   E+PLVVSD  E + KT
Sbjct:   11 DKADTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPR-ENGQARRVPQAV------SGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSDEFEELIKT 151          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.227e-13
Identity = 50/143 (34.97%), Postives = 68/143 (47.55%), Query Frame = 1
Query:   28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            + LP V +A  RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT
Sbjct:   16 IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKT 152          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METM7 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 49/143 (34.27%), Postives = 67/143 (46.85%), Query Frame = 1
Query:   28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT
Sbjct:   16 IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKT 152          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METMJ (50S ribosomal protein L4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13
Identity = 45/143 (31.47%), Postives = 69/143 (48.25%), Query Frame = 1
Query:   28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            + LP++ +   RPD++      +     QP+  +  AG +TSAESWG+GR  +++PR+  G      + A      GGR   P K+ +   ++IN  +KR            P LV  RGH  E   ++PLV  D  E V +T
Sbjct:   16 IDLPEIFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAESWGSGRGAAQVPRLKNG-----SRVARVPQATGGRAAHPPKVEKILVKEINRKEKRKALRSAVAASTYPDLVRERGHLFE--GDLPLVFEDRFEEVTRT 151          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METM6 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13
Identity = 48/143 (33.57%), Postives = 67/143 (46.85%), Query Frame = 1
Query:   28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++             P +V ARGHKIE VP +PLVV+   ES+ KT
Sbjct:   16 IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKT 152          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.956e-13
Identity = 48/143 (33.57%), Postives = 66/143 (46.15%), Query Frame = 1
Query:   28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   E + KT
Sbjct:   16 IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKT 152          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.772e-12
Identity = 46/141 (32.62%), Postives = 66/141 (46.81%), Query Frame = 1
Query:   34 LPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            L  V +   RPD++     +      QP  V   AG +TSA+S G G   +R+ R   G       GAF     GGR   P K+ +  H ++N  ++               +V  RGH +ETVP +PL+VSD  ES++KT
Sbjct:   18 LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGA------GAFVPQAVGGRRCHPPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDFESLKKT 152          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.023e-12
Identity = 48/152 (31.58%), Postives = 68/152 (44.74%), Query Frame = 1
Query:    1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            D+  D + T+ LP V +  +RPD+V         N  Q Y     AG +T+AES G+GR ++ +P+         GQGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT
Sbjct:    7 DLDGDDAGTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKA-------NGQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKT 151          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.023e-12
Identity = 48/152 (31.58%), Postives = 68/152 (44.74%), Query Frame = 1
Query:    1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            D+  D + T+ LP V +  +RPD+V         N  Q Y     AG +T+AES G+GR ++ +P+         GQGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT
Sbjct:    7 DLDGDDAGTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKA-------NGQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKT 151          
The following BLAST results are available for this feature:
BLAST of FC873231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL4_METMA5.510e-1432.2450S ribosomal protein L4P OS=Methanosarcina mazei ... [more]
RL4_HALWD5.510e-1432.4350S ribosomal protein L4P OS=Haloquadratum walsbyi... [more]
RL4_METMP1.227e-1334.9750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METM72.734e-1334.2750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METMJ6.092e-1331.4750S ribosomal protein L4P OS=Methanoculleus marisn... [more]
RL4_METM66.092e-1333.5750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METM57.956e-1333.5750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_META31.772e-1232.6250S ribosomal protein L4P OS=Methanococcus aeolicu... [more]
RL4_HALSA3.023e-1231.5850S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_HALS33.023e-1231.5850S ribosomal protein L4P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873231 ID=FC873231; Name=FC873231; organism=Citrus clementina; type=EST; length=512bp
GACATGGTGACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCATGAA
GGCCTCTATCCGACCCGACATCGTGGGATTTGTCCACTCTAACATCTCCC
AGAACAGTCCCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCAGACC
TCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCCGTGT
CCCCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAACATGT
GTCGCGGTGGTCGCATGTTCACTCCCACAAAGATCTGGCGCCGATGGCAC
CGTAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCATTGC
CGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATCGAGA
CTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTGGAG
AAAACCATCAGCTGCCCTTAAAAGTCCTGAAGCAGATCGGTGCCTATGCT
GACGCCGAAAAG
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