FC873231

Overview
NameFC873231
Unique NameFC873231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METVS (50S ribosomal protein L4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.157e-12
Identity = 47/143 (32.87%), Postives = 66/143 (46.15%), Query Frame = 1 
Query:   28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++               +V ARGHKIE VP +PLVV+   ES+ KT
Sbjct:   16 IELPSVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKT 152
[Close]
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_METTP (50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.735e-12
Identity = 48/143 (33.57%), Postives = 62/143 (43.36%), Query Frame = 1 
Query:   28 VPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            + LP +     RPD++         N  QPY     AG  TSA SWG G  VSR+PR+  G      + A   M RGGR   P    +    KIN  ++             P +V ARGH      E+P+VV    ES+ KT
Sbjct:   16 IVLPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRVPRIVTG-----RRAAAVPMARGGRASHPPVPSKVLSEKINEKERIKAIRSAVAATAKPDIVAARGHLFS--GELPIVVRGEIESISKT 151
The following BLAST results are available for this feature:
BLAST of FC873231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL4_METVS5.157e-1232.8750S ribosomal protein L4P OS=Methanococcus vanniel... [more]
RL4_METTP6.735e-1233.5750S ribosomal protein L4P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873231 ID=FC873231; Name=FC873231; organism=Citrus clementina; type=EST; length=512bp
GACATGGTGACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCATGAA
GGCCTCTATCCGACCCGACATCGTGGGATTTGTCCACTCTAACATCTCCC
AGAACAGTCCCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCAGACC
TCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCCGTGT
CCCCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAACATGT
GTCGCGGTGGTCGCATGTTCACTCCCACAAAGATCTGGCGCCGATGGCAC
CGTAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCATTGC
CGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATCGAGA
CTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTGGAG
AAAACCATCAGCTGCCCTTAAAAGTCCTGAAGCAGATCGGTGCCTATGCT
GACGCCGAAAAG
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