FC873233

Overview
NameFC873233
Unique NameFC873233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 40/145 (27.59%), Postives = 67/145 (46.21%), Query Frame = 2
Query:  176 NRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            ++LF R + +H +LGGG  ADV+LWR K +S  ++    A W++FE   Y   T++   L+L +   F W   + + NR    +P F +   +       +  +VN+ L +  DI+     +              IGS  +F T
Sbjct:    6 DKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQT 150          
BLAST of FC873233 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 36/139 (25.90%), Postives = 62/139 (44.60%), Query Frame = 2
Query:  194 QKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLT 610
            ++ VH  +  G  AD+++W+N++    +L   T +W LFE   Y F   V    +L ++  F W   + LFNR   ++P   +  E    +   +   +N  L + ++I  G   KQ             +G+  NFLT
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLT 140          
The following BLAST results are available for this feature:
BLAST of FC873233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RTNLL_ARATH5.342e-1327.59Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLJ_ARATH8.528e-1125.90Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH11FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873233 ID=FC873233; Name=FC873233; organism=Citrus clementina; type=EST; length=612bp
TTCAACAGACCCCATTTTTTTCCTTTTTTCTTGAAAGATTGGAAGAATGC
CAGAGAAAATAACAGCAGAGAACATTTTGGACAACCTTGTGGAAACCATT
TCAGATAAGGTTCAAAAGCAGAAAGCTGTATCATTTTTTGAGGAAGAGAC
CTCAAGCTCAGTCACTGCTCGTTTCAATCGGCTGTTCGGACGCCAGAAAC
CTGTCCACCATCTTTTGGGCGGTGGAAAATCTGCTGATGTTTTGTTATGG
AGGAACAAGAAGATATCAGCCAGTGTATTAATGGGTGCAACAGCAATTTG
GGTGCTCTTTGAATGGCTTAACTACCATTTTCTGACCATTGTATGCTTTG
CTTTGGTCCTTGGCATGCTTGCTCAATTTTTTTGGGTAAACATTTCGGGC
TTATTTAACAGATCACCATCAAAAGTTCCCCGCTTTGTTCTGCCTCCAGA
GGTATTTGCTAACATTGGCACGACAGTTTGTGCTAATGTTAACGAAGCTC
TGGGGCTACTTCAGGACATTTCATGTGGAGGAAAACTGAAACAACTTCTT
GTGGCTGTAGCAAGCTTGTGGGCTGCTGCTGCGATAGGGAGCTGTTGTAA
CTTTTTGACCGT
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