FC873239

Overview
NameFC873239
Unique NameFC873239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ORITI (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 61/121 (50.41%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+  V +P NKR+   L YI+G+GR+ A++I  ++++  NK  KD+S +EL+ +R  + SKY +EGDLRR   L I++ K+I+CY G+RHI+ LP RGQ+T +N RT KGK +AIAGKKK
Sbjct:    2 ARISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ONYPE (30S ribosomal protein S13 OS=Onion yellows phytoplasma GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 60/120 (50.00%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ G++IP++KR+  +L YI+G+G   + +IL +L ++  I  K+++E++L  +R E++KY +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ T+NN  T+KGK  AIAGKKK
Sbjct:    2 ARIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELNIDQNIRVKNLTEQQLSALRSEITKYNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAIAGKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_GRABC (30S ribosomal protein S13 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsM PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 61/124 (49.19%), Postives = 88/124 (70.97%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV IP NKR+  SL+YI+G+G  +A++I  +L + + +    +S++E++ IR+ + + Y +EGDLRR  A+ I+RL ++ CYRG+RH +GLP RGQ T  N RT KGK VAIAGKKK  R
Sbjct:    2 ARIAGVNIPTNKRVAISLRYIYGIGPAQAQKICTELSIPDERRVNQLSDDEILRIRELIDREYRVEGDLRREVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKKVTR 125          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACSU (30S ribosomal protein S13 OS=Bacillus subtilis GN=rpsM PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 65/120 (54.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IP +KR+  SL YI G+GRT A+Q+L +  + E+   +D++EEEL  IRD + K  +EGDLRR  +L I+RL EI  YRGIRH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACP2 (30S ribosomal protein S13 OS=Bacillus pumilus (strain SAFR-032) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IP +KR+  SL Y+ G+GRT A+Q+L +  + E+   +D++E+EL  IRD + K  +EGDLRR  +L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTRVRDLTEDELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACA2 (30S ribosomal protein S13 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IP +KR+  SL Y+ G+GRT A+Q+L +  + E+   +D++EEEL  IRD + K  +EGDLRR  +L I+RL EI  YRGIRH +GLP RGQ++KNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDVIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ACIF5 (30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 531
            AR+ GV IPNNK+IE +L YI+G+GRTRAR +L   D+  + ++ KD+SE EL  IR EV+K+++EGDLRR   + I+RL ++ CYRGIRH +GLP  GQ TK N RT KG   +I
Sbjct:    2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEVAKFLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKGPAKSI 116          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ACIF2 (30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 531
            AR+ GV IPNNK+IE +L YI+G+GRTRAR +L   D+  + ++ KD+SE EL  IR EV+K+++EGDLRR   + I+RL ++ CYRGIRH +GLP  GQ TK N RT KG   +I
Sbjct:    2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEVAKFLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKGPAKSI 116          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_SYNP2 (30S ribosomal protein S13 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 59/124 (47.58%), Postives = 90/124 (72.58%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS-KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV++P +KRIE +L Y++G+G +RA++I+ +  +  +   +D+S+E+ + +R  V+  Y +EGDLRR  ++ I+RL +I  YRG RH QGLP RGQ T+ N RT +G+RV +AGKKKAPR
Sbjct:    2 ARIAGVDLPRDKRIEIALTYVYGIGLSRAQEIIANTGVNPDTRVRDLSDEDALKLRSYVTDNYQVEGDLRRLESMNIKRLVDIGTYRGRRHRQGLPVRGQRTRTNARTRRGRRVTVAGKKKAPR 125          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 59/120 (49.17%), Postives = 91/120 (75.83%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ G++IP++KR+  +L YI+G+G+  +++IL +L + + I  K+++E++L ++R E++KY +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ T+NN  T+KGK  +IAGKKK
Sbjct:    2 ARIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITKYSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121          
The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_ORITI8.393e-2850.4130S ribosomal protein S13 OS=Orientia tsutsugamush... [more]
RS13_ONYPE8.393e-2850.0030S ribosomal protein S13 OS=Onion yellows phytopl... [more]
RS13_GRABC8.393e-2849.1930S ribosomal protein S13 OS=Granulibacter bethesd... [more]
RS13_BACSU8.393e-2854.1730S ribosomal protein S13 OS=Bacillus subtilis GN=... [more]
RS13_BACP28.393e-2853.3330S ribosomal protein S13 OS=Bacillus pumilus (str... [more]
RS13_BACA28.393e-2853.3330S ribosomal protein S13 OS=Bacillus amyloliquefa... [more]
RS13_ACIF58.393e-2854.3130S ribosomal protein S13 OS=Acidithiobacillus fer... [more]
RS13_ACIF28.393e-2854.3130S ribosomal protein S13 OS=Acidithiobacillus fer... [more]
RS13_SYNP21.096e-2747.5830S ribosomal protein S13 OS=Synechococcus sp. (st... [more]
RS13_PHYAS1.096e-2749.1730S ribosomal protein S13 OS=Phytoplasma australie... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bp
CACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAAT
GGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCA
ACGGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTT
TCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGG
AGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACTCGCTTCAGTATA
TTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCAAA
ATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACAAT
TCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGAGGCGGTTCA
ATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGCTACCGCGGAATT
CGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACACAAAGAACAATTG
TCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGCCC
CTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGGATAGGGTTGAT
TTTCTATTGTATTGAATTTGAATGTGAATCATTTTGACTACAAGCTTGGT
TGCTTTCGATTCTGCCGGAGCTTTTGATGTATATGTTTTACTTTTCTTTT
ATGCATTGCATTGATGTTGTGTTTTAAAAAAAAAAAAAAAAAA
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