FC873239
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BIFLI (30S ribosomal protein S13 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsM PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27 Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD + + Y IEGDLRR IRR +I CY+G RH +GLP RGQ TK N RT KG + +AGKKKA + Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BIFLD (30S ribosomal protein S13 OS=Bifidobacterium longum (strain DJO10A) GN=rpsM PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27 Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD + + Y IEGDLRR IRR +I CY+G RH +GLP RGQ TK N RT KG + +AGKKKA + Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREVDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_FLAJ1 (30S ribosomal protein S13 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rpsM PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27 Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 AR+ GV+IP NKR +L YI G+G++RA +IL ++ ++K +D +++E+ IRD VS Y IEG+LR +L I+RL +I CYRGIRH GLP RGQ TKNN RT KGKR +A KKKA + Sbjct: 2 ARIAGVDIPKNKRGVIALTYIFGLGKSRAIEILEKAQVSQDKKVQDWNDDEIGAIRDAVSFYKIEGELRSEVSLNIKRLMDIGCYRGIRHRSGLPLRGQRTKNNSRTRKGKRKTVANKKKATK 124
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BIFAA (30S ribosomal protein S13 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rpsM PE=3 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27 Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS-KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD + Y IEGDLRR IRR +I CY+G RH +GLP RGQ TK N RT KG + +AGKKKA + Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGINPDIRVKDLTDEQLITLRDYLEGNYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RR13_PORPU (30S ribosomal protein S13, chloroplastic OS=Porphyra purpurea GN=rps13 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27 Identity = 59/124 (47.58%), Postives = 92/124 (74.19%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 AR+ GV++P NKRIE +L YI+G+G +R+++IL ++ I ++++++++++IR+ + S Y IEGDL+RF +++I+RL EI YRG RH GLP RGQ T+ N RT +G + +AGKKKAPR Sbjct: 2 ARIAGVDLPRNKRIEIALTYIYGIGLSRSKEILKKTNIDADIRCQNLNDQQIVSIREILESSYQIEGDLKRFESMSIKRLMEISTYRGRRHRLGLPLRGQRTRTNARTRRGGKKTVAGKKKAPR 125
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_RHOPB (30S ribosomal protein S13 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsM PE=3 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27 Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV IP NKR+ +LQYIHG+G+ A +IL +K+ ++K +S++E++ IR+ + + YM+EGDLRR + I+RL ++ CYRG+RH +GLP RGQ T N RT KG +IAGKKK Sbjct: 2 ARIAGVNIPTNKRVLIALQYIHGIGQKNAAEILEKVKIADDKRVNQLSDQEVLQIREVIDRDYMVEGDLRRETGMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKSIAGKKK 122
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ORITB (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Boryong) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27 Identity = 60/121 (49.59%), Postives = 88/121 (72.73%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 +R+ V +P NKR+ L YI+G+GR+ A++I ++++ NK KD+S +EL+ +R + SKY +EGDLRR L I++ K+I+CY G+RHI+ LP RGQ+T +N RT KGK +AIAGKKK Sbjct: 2 SRISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKK 122
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_MYCCT (30S ribosomal protein S13 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GVEIPNNKR+ SL YI+G+G A+ +L L + I KD++EE++ I E+SKY EG+LRR +L I+RL EI YRG+RH +GLP RGQ +K N RT+KG R +A KKK Sbjct: 2 ARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISIEISKYKTEGELRREVSLNIKRLMEIGSYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_LACF3 (30S ribosomal protein S13 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27 Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV++P +KRI L YI G+G T A++IL + + I +D++ ++ IR EV + +EGDLRR +L I+RL+EI YRG+RH GLP RGQHTKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILANAGVSEDIRVRDLTPDQEEKIRAEVDQIKVEGDLRREVSLNIKRLQEIGSYRGMRHRHGLPVRGQHTKNNARTRKGKAVAIAGKKK 121
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_LACBA (30S ribosomal protein S13 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27 Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 193 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 R+ GV++P +KRI Y L YI G+G A +I+ D + + +D++ ++ +R EV KY +EGDLRR +L I+ L+EI YRG+RH +GLP RGQHTKNN RT KGK V+IAGKKK Sbjct: 3 RIAGVDLPRDKRIAYGLTYIFGIGINTAHKIVADAGVPEDVRVRDLTPDQEDKVRAEVDKYKVEGDLRREVSLNIKNLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKAVSIAGKKK 121 The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bpback to top |