FC873239

Overview
NameFC873239
Unique NameFC873239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BIFLI (30S ribosomal protein S13 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV+IPN KRIE +L YI GVGRTRA++ L    +   I  KD+++E+LIT+RD + + Y IEGDLRR     IRR  +I CY+G RH +GLP RGQ TK N RT KG +  +AGKKKA +
Sbjct:    2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BIFLD (30S ribosomal protein S13 OS=Bifidobacterium longum (strain DJO10A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV+IPN KRIE +L YI GVGRTRA++ L    +   I  KD+++E+LIT+RD + + Y IEGDLRR     IRR  +I CY+G RH +GLP RGQ TK N RT KG +  +AGKKKA +
Sbjct:    2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREVDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_FLAJ1 (30S ribosomal protein S13 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27
Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV+IP NKR   +L YI G+G++RA +IL   ++ ++K  +D +++E+  IRD VS Y IEG+LR   +L I+RL +I CYRGIRH  GLP RGQ TKNN RT KGKR  +A KKKA +
Sbjct:    2 ARIAGVDIPKNKRGVIALTYIFGLGKSRAIEILEKAQVSQDKKVQDWNDDEIGAIRDAVSFYKIEGELRSEVSLNIKRLMDIGCYRGIRHRSGLPLRGQRTKNNSRTRKGKRKTVANKKKATK 124          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BIFAA (30S ribosomal protein S13 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rpsM PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27
Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS-KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV+IPN KRIE +L YI GVGRTRA++ L    +   I  KD+++E+LIT+RD +   Y IEGDLRR     IRR  +I CY+G RH +GLP RGQ TK N RT KG +  +AGKKKA +
Sbjct:    2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGINPDIRVKDLTDEQLITLRDYLEGNYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RR13_PORPU (30S ribosomal protein S13, chloroplastic OS=Porphyra purpurea GN=rps13 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27
Identity = 59/124 (47.58%), Postives = 92/124 (74.19%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV++P NKRIE +L YI+G+G +R+++IL    ++  I  ++++++++++IR+ + S Y IEGDL+RF +++I+RL EI  YRG RH  GLP RGQ T+ N RT +G +  +AGKKKAPR
Sbjct:    2 ARIAGVDLPRNKRIEIALTYIYGIGLSRSKEILKKTNIDADIRCQNLNDQQIVSIREILESSYQIEGDLKRFESMSIKRLMEISTYRGRRHRLGLPLRGQRTRTNARTRRGGKKTVAGKKKAPR 125          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_RHOPB (30S ribosomal protein S13 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsM PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV IP NKR+  +LQYIHG+G+  A +IL  +K+ ++K    +S++E++ IR+ + + YM+EGDLRR   + I+RL ++ CYRG+RH +GLP RGQ T  N RT KG   +IAGKKK
Sbjct:    2 ARIAGVNIPTNKRVLIALQYIHGIGQKNAAEILEKVKIADDKRVNQLSDQEVLQIREVIDRDYMVEGDLRRETGMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKSIAGKKK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ORITB (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Boryong) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 60/121 (49.59%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            +R+  V +P NKR+   L YI+G+GR+ A++I  ++++  NK  KD+S +EL+ +R  + SKY +EGDLRR   L I++ K+I+CY G+RHI+ LP RGQ+T +N RT KGK +AIAGKKK
Sbjct:    2 SRISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_MYCCT (30S ribosomal protein S13 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GVEIPNNKR+  SL YI+G+G   A+ +L  L +   I  KD++EE++  I  E+SKY  EG+LRR  +L I+RL EI  YRG+RH +GLP RGQ +K N RT+KG R  +A KKK
Sbjct:    2 ARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISIEISKYKTEGELRREVSLNIKRLMEIGSYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_LACF3 (30S ribosomal protein S13 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV++P +KRI   L YI G+G T A++IL +  +   I  +D++ ++   IR EV +  +EGDLRR  +L I+RL+EI  YRG+RH  GLP RGQHTKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILANAGVSEDIRVRDLTPDQEEKIRAEVDQIKVEGDLRREVSLNIKRLQEIGSYRGMRHRHGLPVRGQHTKNNARTRKGKAVAIAGKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_LACBA (30S ribosomal protein S13 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  193 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            R+ GV++P +KRI Y L YI G+G   A +I+ D  +   +  +D++ ++   +R EV KY +EGDLRR  +L I+ L+EI  YRG+RH +GLP RGQHTKNN RT KGK V+IAGKKK
Sbjct:    3 RIAGVDLPRDKRIAYGLTYIFGIGINTAHKIVADAGVPEDVRVRDLTPDQEDKVRAEVDKYKVEGDLRREVSLNIKNLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKAVSIAGKKK 121          
The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_BIFLI1.096e-2754.0330S ribosomal protein S13 OS=Bifidobacterium longu... [more]
RS13_BIFLD1.096e-2754.0330S ribosomal protein S13 OS=Bifidobacterium longu... [more]
RS13_FLAJ11.432e-2752.8530S ribosomal protein S13 OS=Flavobacterium johnso... [more]
RS13_BIFAA1.432e-2754.0330S ribosomal protein S13 OS=Bifidobacterium adole... [more]
RR13_PORPU1.432e-2747.5830S ribosomal protein S13, chloroplastic OS=Porphy... [more]
RS13_RHOPB1.870e-2749.5930S ribosomal protein S13 OS=Rhodopseudomonas palu... [more]
RS13_ORITB1.870e-2749.5930S ribosomal protein S13 OS=Orientia tsutsugamush... [more]
RS13_MYCCT1.870e-2752.5030S ribosomal protein S13 OS=Mycoplasma capricolum... [more]
RS13_LACF31.870e-2753.3330S ribosomal protein S13 OS=Lactobacillus ferment... [more]
RS13_LACBA1.870e-2751.2630S ribosomal protein S13 OS=Lactobacillus brevis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bp
CACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAAT
GGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCA
ACGGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTT
TCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGG
AGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACTCGCTTCAGTATA
TTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCAAA
ATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACAAT
TCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGAGGCGGTTCA
ATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGCTACCGCGGAATT
CGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACACAAAGAACAATTG
TCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGCCC
CTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGGATAGGGTTGAT
TTTCTATTGTATTGAATTTGAATGTGAATCATTTTGACTACAAGCTTGGT
TGCTTTCGATTCTGCCGGAGCTTTTGATGTATATGTTTTACTTTTCTTTT
ATGCATTGCATTGATGTTGTGTTTTAAAAAAAAAAAAAAAAAA
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