FC873239

Overview
NameFC873239
Unique NameFC873239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_CORK4 (30S ribosomal protein S13 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 56/121 (46.28%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKD-MSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV++P NKR+E +L YI+G+G T A+Q+L   ++   +  D ++++++  +RD + ++Y +EGDLRR     IRR  EI  Y+G+RH +GLP RGQ TK N RT KG +  IAGKKK
Sbjct:    2 ARLAGVDLPRNKRMEVALTYIYGIGPTSAKQLLEKTEISPDLRTDALTDDQVAKLRDAIEAEYTVEGDLRRQVQADIRRKIEIGSYQGLRHRRGLPVRGQRTKTNARTRKGPKKTIAGKKK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_COREF (30S ribosomal protein S13 OS=Corynebacterium efficiens GN=rpsM PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 56/121 (46.28%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV++P NKR+E +L YI+G+G  RA+Q+L +  +   + T ++++E++ ++RD + + + +EGDLRR     IRR  EI  Y+G+RH +GLP RGQ TK N RT KG +  IAGKKK
Sbjct:    2 ARLAGVDLPRNKRMEIALTYIYGIGPARAKQLLEETGVSPDLRTDNLTDEQIASLRDVIEATWKVEGDLRREVQADIRRKIEIGSYQGLRHRRGLPVRGQRTKTNARTRKGPKKTIAGKKK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACTN (30S ribosomal protein S13 OS=Bacteroides thetaiotaomicron GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  193 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            R+ GV++P NKR E +L Y++G+GR+ + +IL    ++  +  KD ++++   IR+ + ++Y +EGDLR    L I+RL +I CYRG+RH  GLP RGQ TKNN RT KG++  +A KKKA +
Sbjct:    4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGAEYKVEGDLRSEIQLNIKRLMDIGCYRGVRHRIGLPVRGQSTKNNARTRKGRKKTVANKKKATK 126          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACFR (30S ribosomal protein S13 OS=Bacteroides fragilis GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  193 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            R+ GV++P NKR E +L Y++G+GR+ + +IL    ++  +  KD ++++   IR+ + ++Y +EGDLR    L I+RL +I CYRG+RH  GLP RGQ TKNN RT KG++  +A KKKA +
Sbjct:    4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGAEYKVEGDLRSEVQLNIKRLMDIGCYRGVRHRIGLPVRGQSTKNNARTRKGRKKTVANKKKATK 126          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACFN (30S ribosomal protein S13 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  193 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            R+ GV++P NKR E +L Y++G+GR+ + +IL    ++  +  KD ++++   IR+ + ++Y +EGDLR    L I+RL +I CYRG+RH  GLP RGQ TKNN RT KG++  +A KKKA +
Sbjct:    4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGAEYKVEGDLRSEVQLNIKRLMDIGCYRGVRHRIGLPVRGQSTKNNARTRKGRKKTVANKKKATK 126          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ALCBS (30S ribosomal protein S13 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 531
            AR+ GV IP NK    SL YI G+GRTRA  I     +E     ++++ E+L  IR EV+K+  EGDLRR   + I+RL ++ CYRGIRH +GLP RGQ TK N RT KG R  I
Sbjct:    2 ARIAGVNIPENKHTVISLTYIFGIGRTRAESICATTGIEQTAKVRELTGEQLDAIRGEVAKFSTEGDLRREINMNIKRLMDLGCYRGIRHRRGLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_AGRT5 (30S ribosomal protein S13 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpsM PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 56/122 (45.90%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV IP  KR+  +L YIHG+G   A++I+  V +  E ++ + +++ E++ IR+ + + Y +EGDLRR  ++ I+RL ++ CYRG+RH +GLP RGQ T  N RT KG   AIAGKKK
Sbjct:    2 ARIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMDKVGIPAEKRVHQ-LTDAEVLQIREAIDRDYQVEGDLRRETSMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_YERE8 (30S ribosomal protein S13 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 55/115 (47.83%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 531
            AR+ G+ IP+ K    +L  I+G+G+TR++ I V   + EN    ++SEE++  +RDEV+KY++EGDLRR   L+I+RL ++  YRG+RH +GLP RGQ TK N RT KG R  I
Sbjct:    2 ARIAGINIPDQKHTVIALTAIYGIGKTRSQAICVAAGIAENVKISELSEEQIEKLRDEVAKYVVEGDLRREVTLSIKRLMDLGTYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_VIBCH (30S ribosomal protein S13 OS=Vibrio cholerae GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 52/115 (45.22%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 531
            AR+ G+ IP++K    +L  I+G+G+TR++ IL DL +   +   +++EE++  +RD V+KY +EGDLRR  ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R  I
Sbjct:    2 ARIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQLRDGVAKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_SYNPW (30S ribosomal protein S13 OS=Synechococcus sp. (strain WH7803) GN=rpsM PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 55/120 (45.83%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IP +KRIE +L YI+G+G TRA+ IL    +  +   KD+ + ++  +R     + IEGDLRR   +A++RL++I C RG RH   LP RGQ T+ N RT +G R  +AGKKK
Sbjct:    2 ARIAGVDIPRDKRIEVALTYIYGIGLTRAQTILSKTGVNPDTRVKDLEDGDVQKLRGATEAFTIEGDLRRQEGMALKRLQDIGCVRGRRHRMSLPVRGQRTRTNARTRRGARKTVAGKKK 121          
The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_CORK42.139e-2346.2830S ribosomal protein S13 OS=Corynebacterium kropp... [more]
RS13_COREF2.139e-2346.2830S ribosomal protein S13 OS=Corynebacterium effic... [more]
RS13_BACTN2.139e-2344.7230S ribosomal protein S13 OS=Bacteroides thetaiota... [more]
RS13_BACFR2.139e-2344.7230S ribosomal protein S13 OS=Bacteroides fragilis ... [more]
RS13_BACFN2.139e-2344.7230S ribosomal protein S13 OS=Bacteroides fragilis ... [more]
RS13_ALCBS2.139e-2350.4330S ribosomal protein S13 OS=Alcanivorax borkumens... [more]
RS13_AGRT52.139e-2345.9030S ribosomal protein S13 OS=Agrobacterium tumefac... [more]
RS13_YERE82.794e-2347.8330S ribosomal protein S13 OS=Yersinia enterocoliti... [more]
RS13_VIBCH2.794e-2345.2230S ribosomal protein S13 OS=Vibrio cholerae GN=rp... [more]
RS13_SYNPW2.794e-2345.8330S ribosomal protein S13 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bp
CACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAAT
GGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCA
ACGGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTT
TCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGG
AGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACTCGCTTCAGTATA
TTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCAAA
ATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACAAT
TCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGAGGCGGTTCA
ATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGCTACCGCGGAATT
CGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACACAAAGAACAATTG
TCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGCCC
CTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGGATAGGGTTGAT
TTTCTATTGTATTGAATTTGAATGTGAATCATTTTGACTACAAGCTTGGT
TGCTTTCGATTCTGCCGGAGCTTTTGATGTATATGTTTTACTTTTCTTTT
ATGCATTGCATTGATGTTGTGTTTTAAAAAAAAAAAAAAAAAA
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