FC873239
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_CORK4 (30S ribosomal protein S13 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23 Identity = 56/121 (46.28%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKD-MSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV++P NKR+E +L YI+G+G T A+Q+L ++ + D ++++++ +RD + ++Y +EGDLRR IRR EI Y+G+RH +GLP RGQ TK N RT KG + IAGKKK Sbjct: 2 ARLAGVDLPRNKRMEVALTYIYGIGPTSAKQLLEKTEISPDLRTDALTDDQVAKLRDAIEAEYTVEGDLRRQVQADIRRKIEIGSYQGLRHRRGLPVRGQRTKTNARTRKGPKKTIAGKKK 122
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_COREF (30S ribosomal protein S13 OS=Corynebacterium efficiens GN=rpsM PE=3 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23 Identity = 56/121 (46.28%), Postives = 84/121 (69.42%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV++P NKR+E +L YI+G+G RA+Q+L + + + T ++++E++ ++RD + + + +EGDLRR IRR EI Y+G+RH +GLP RGQ TK N RT KG + IAGKKK Sbjct: 2 ARLAGVDLPRNKRMEIALTYIYGIGPARAKQLLEETGVSPDLRTDNLTDEQIASLRDVIEATWKVEGDLRREVQADIRRKIEIGSYQGLRHRRGLPVRGQRTKTNARTRKGPKKTIAGKKK 122
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACTN (30S ribosomal protein S13 OS=Bacteroides thetaiotaomicron GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23 Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1 Query: 193 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 R+ GV++P NKR E +L Y++G+GR+ + +IL ++ + KD ++++ IR+ + ++Y +EGDLR L I+RL +I CYRG+RH GLP RGQ TKNN RT KG++ +A KKKA + Sbjct: 4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGAEYKVEGDLRSEIQLNIKRLMDIGCYRGVRHRIGLPVRGQSTKNNARTRKGRKKTVANKKKATK 126
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACFR (30S ribosomal protein S13 OS=Bacteroides fragilis GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23 Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1 Query: 193 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 R+ GV++P NKR E +L Y++G+GR+ + +IL ++ + KD ++++ IR+ + ++Y +EGDLR L I+RL +I CYRG+RH GLP RGQ TKNN RT KG++ +A KKKA + Sbjct: 4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGAEYKVEGDLRSEVQLNIKRLMDIGCYRGVRHRIGLPVRGQSTKNNARTRKGRKKTVANKKKATK 126
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_BACFN (30S ribosomal protein S13 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23 Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1 Query: 193 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 R+ GV++P NKR E +L Y++G+GR+ + +IL ++ + KD ++++ IR+ + ++Y +EGDLR L I+RL +I CYRG+RH GLP RGQ TKNN RT KG++ +A KKKA + Sbjct: 4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGAEYKVEGDLRSEVQLNIKRLMDIGCYRGVRHRIGLPVRGQSTKNNARTRKGRKKTVANKKKATK 126
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ALCBS (30S ribosomal protein S13 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23 Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 531 AR+ GV IP NK SL YI G+GRTRA I +E ++++ E+L IR EV+K+ EGDLRR + I+RL ++ CYRGIRH +GLP RGQ TK N RT KG R I Sbjct: 2 ARIAGVNIPENKHTVISLTYIFGIGRTRAESICATTGIEQTAKVRELTGEQLDAIRGEVAKFSTEGDLRREINMNIKRLMDLGCYRGIRHRRGLPLRGQRTKTNARTRKGPRKPI 116
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_AGRT5 (30S ribosomal protein S13 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpsM PE=3 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23 Identity = 56/122 (45.90%), Postives = 83/122 (68.03%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV IP KR+ +L YIHG+G A++I+ V + E ++ + +++ E++ IR+ + + Y +EGDLRR ++ I+RL ++ CYRG+RH +GLP RGQ T N RT KG AIAGKKK Sbjct: 2 ARIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMDKVGIPAEKRVHQ-LTDAEVLQIREAIDRDYQVEGDLRRETSMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_YERE8 (30S ribosomal protein S13 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rpsM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23 Identity = 55/115 (47.83%), Postives = 79/115 (68.70%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 531 AR+ G+ IP+ K +L I+G+G+TR++ I V + EN ++SEE++ +RDEV+KY++EGDLRR L+I+RL ++ YRG+RH +GLP RGQ TK N RT KG R I Sbjct: 2 ARIAGINIPDQKHTVIALTAIYGIGKTRSQAICVAAGIAENVKISELSEEQIEKLRDEVAKYVVEGDLRREVTLSIKRLMDLGTYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_VIBCH (30S ribosomal protein S13 OS=Vibrio cholerae GN=rpsM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23 Identity = 52/115 (45.22%), Postives = 79/115 (68.70%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 531 AR+ G+ IP++K +L I+G+G+TR++ IL DL + + +++EE++ +RD V+KY +EGDLRR ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R I Sbjct: 2 ARIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQLRDGVAKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_SYNPW (30S ribosomal protein S13 OS=Synechococcus sp. (strain WH7803) GN=rpsM PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23 Identity = 55/120 (45.83%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV+IP +KRIE +L YI+G+G TRA+ IL + + KD+ + ++ +R + IEGDLRR +A++RL++I C RG RH LP RGQ T+ N RT +G R +AGKKK Sbjct: 2 ARIAGVDIPRDKRIEVALTYIYGIGLTRAQTILSKTGVNPDTRVKDLEDGDVQKLRGATEAFTIEGDLRRQEGMALKRLQDIGCVRGRRHRMSLPVRGQRTRTNARTRRGARKTVAGKKK 121 The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bpback to top |