FC873239

Overview
NameFC873239
Unique NameFC873239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_FLAPJ (30S ribosomal protein S13 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV+IP NKR   +L YI GVGR+RA ++L   ++ ++K  +D +++E+  IR+ VS Y IEG+LR   +L I+RL +I CYRGIRH  GLP RGQ TKNN RT KGKR  +A KKKA +
Sbjct:    2 ARIAGVDIPKNKRGVIALTYIFGVGRSRAIEVLEKAQVSQDKKVQDWNDDEIGGIREAVSFYKIEGELRSEVSLNIKRLMDIGCYRGIRHRSGLPLRGQRTKNNSRTRKGKRKTVANKKKATK 124          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_DICT6 (30S ribosomal protein S13 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 62/121 (51.24%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV++P+NK+IE +L YI+G+GRT +++IL    ++ NK  KD++EEE+  +R+E+ + Y +EGDLR+  A  IRRL EI CYRGIRH +GLP RGQ T+ N RT KG R  +  K+K
Sbjct:    2 ARIAGVDLPSNKKIEIALTYIYGIGRTTSKKILQATGVDPNKRVKDLTEEEISKLREEIENNYKVEGDLRQEVAANIRRLIEIGCYRGIRHKRGLPVRGQRTRCNARTRKGPRKTVGAKRK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_AZOSE (30S ribosomal protein S13 OS=Azoarcus sp. (strain EbN1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 59/119 (49.58%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 543
            AR+ GV IPN+K  E +L  I+G+GR+RA++I     +   +  KD++E ++  +RDEV+K+++EGDLRR   + I+RL ++ CYRG+RH +GLP RGQ T+ N RT KG R AIAGKK
Sbjct:    2 ARIAGVNIPNHKHAEIALTAIYGIGRSRAQKICDAANVVRSVKMKDLTESDMERLRDEVAKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKAIAGKK 120          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_LEIXX (30S ribosomal protein S13 OS=Leifsonia xyli subsp. xyli GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS-KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 549
            AR+ GV+IP  KR+E +L YI+GVGRTRA Q L + ++  +I  KD+++E+L+++RD +   + +EGDLRR  A  IRR  EI  Y GIRH +GLP RGQ TK N RT KG +  +AGKKKA
Sbjct:    2 ARLAGVDIPREKRVEVALTYIYGVGRTRALQTLRETEISGEIRVKDLTDEQLVSLRDYIEGNFKVEGDLRREVAADIRRKVEIGSYEGIRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKA 123          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_DICTD (30S ribosomal protein S13 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27
Identity = 61/121 (50.41%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV++P+NK++E +L YI+G+GRT +++IL    ++ NK  KD++EEE+  +R+E+ + Y +EGDLR+  A  IRRL EI CYRGIRH +GLP RGQ T+ N RT KG R  +  K+K
Sbjct:    2 ARIAGVDLPSNKKVEIALTYIYGIGRTTSKKILQATGVDPNKRVKDLTEEEISKLREEIENNYKVEGDLRQEVAANIRRLIEIGCYRGIRHKRGLPVRGQRTRCNARTRKGPRKTVGAKRK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_AYWBP (30S ribosomal protein S13 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27
Identity = 61/121 (50.41%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGK-RVAIAGKKK 546
            AR+ G++IP++KR+  +L YI+G+G   + +IL +LK++  I  K+++E++L  +R E++KY +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ T+NN  T+KGK + AIAGKKK
Sbjct:    2 ARIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELKIDQNIRVKNLTEQQLSALRIEITKYNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAAIAGKKK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ZYMMO (30S ribosomal protein S13 OS=Zymomonas mobilis GN=rpsM PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV IP NKR+E +L YIHG+G T A++I+  L +   +  +D+S+ E++ IR+ + + Y +EGDLRR  A+ I+RL ++ CYRG+RH +GLP RGQ T  N RT KGK   IAGKKK
Sbjct:    2 ARIAGVNIPTNKRVEIALTYIHGIGPTTAKKIVTKLGIAPERRVQDLSDNEVLQIREAIDADYTVEGDLRRQVAMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGKAKPIAGKKK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_GRAFK (30S ribosomal protein S13 OS=Gramella forsetii (strain KT0803) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV+IP  KR   +L YI G+GR+RA++IL   K+ E+K   D  ++E+  IR+ V ++ IEG+LR    ++I+RL +I CYRGIRH  GLP RGQ TKNN RT KG+R  +A KKKA +
Sbjct:    2 ARIAGVDIPKQKRGVIALTYIFGIGRSRAQEILAQAKVDESKKVSDWDDDEIGKIREAVGQFTIEGELRTEVQISIKRLMDIGCYRGIRHRAGLPLRGQRTKNNSRTRKGRRKTVANKKKATK 124          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_FINM2 (30S ribosomal protein S13 OS=Finegoldia magna (strain ATCC 29328) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR 522
            AR+ GV++PN+KR+E  L  I+G+GR  + +IL  L +  +   KD++E EL  IR+E+  Y+ EGDLRR  A+ I+RLKEI CYRG RH +GLP RGQHTKNN RT KG R
Sbjct:    2 ARIQGVDLPNDKRVEIGLTAIYGIGRQSSNKILAKLGINPDTRVKDLTESELSDIRNELDNYLTEGDLRRDVAMNIKRLKEINCYRGSRHKKGLPVRGQHTKNNARTRKGPR 113          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_EUBE2 (30S ribosomal protein S13 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIR---DEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV++P  KRIE  L Y++G+GR RA +IL +  +  +   KD+++EE+  I    D   ++++EGDLRR  A+ I+RLKEI CYRGIRH +GLPCRGQ TK N RT KG +  +A KKK
Sbjct:    2 ARISGVDLPREKRIEIGLTYVYGIGRVRASKILEEAGVNPDTRVKDLTDEEVAKIAKVIDADPEHLVEGDLRREVAMNIKRLKEIGCYRGIRHRKGLPCRGQKTKTNARTCKGPKKTVANKKK 124          
The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_FLAPJ1.870e-2752.8530S ribosomal protein S13 OS=Flavobacterium psychr... [more]
RS13_DICT61.870e-2751.2430S ribosomal protein S13 OS=Dictyoglomus thermoph... [more]
RS13_AZOSE1.870e-2749.5830S ribosomal protein S13 OS=Azoarcus sp. (strain ... [more]
RS13_LEIXX2.442e-2752.4630S ribosomal protein S13 OS=Leifsonia xyli subsp.... [more]
RS13_DICTD2.442e-2750.4130S ribosomal protein S13 OS=Dictyoglomus turgidum... [more]
RS13_AYWBP2.442e-2750.4130S ribosomal protein S13 OS=Aster yellows witches... [more]
RS13_ZYMMO3.189e-2750.4130S ribosomal protein S13 OS=Zymomonas mobilis GN=... [more]
RS13_GRAFK3.189e-2750.4130S ribosomal protein S13 OS=Gramella forsetii (st... [more]
RS13_FINM23.189e-2754.4630S ribosomal protein S13 OS=Finegoldia magna (str... [more]
RS13_EUBE23.189e-2750.4130S ribosomal protein S13 OS=Eubacterium eligens (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bp
CACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAAT
GGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCA
ACGGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTT
TCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGG
AGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACTCGCTTCAGTATA
TTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCAAA
ATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACAAT
TCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGAGGCGGTTCA
ATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGCTACCGCGGAATT
CGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACACAAAGAACAATTG
TCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGCCC
CTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGGATAGGGTTGAT
TTTCTATTGTATTGAATTTGAATGTGAATCATTTTGACTACAAGCTTGGT
TGCTTTCGATTCTGCCGGAGCTTTTGATGTATATGTTTTACTTTTCTTTT
ATGCATTGCATTGATGTTGTGTTTTAAAAAAAAAAAAAAAAAA
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