FC873239
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_FLAPJ (30S ribosomal protein S13 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27 Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 AR+ GV+IP NKR +L YI GVGR+RA ++L ++ ++K +D +++E+ IR+ VS Y IEG+LR +L I+RL +I CYRGIRH GLP RGQ TKNN RT KGKR +A KKKA + Sbjct: 2 ARIAGVDIPKNKRGVIALTYIFGVGRSRAIEVLEKAQVSQDKKVQDWNDDEIGGIREAVSFYKIEGELRSEVSLNIKRLMDIGCYRGIRHRSGLPLRGQRTKNNSRTRKGKRKTVANKKKATK 124
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_DICT6 (30S ribosomal protein S13 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27 Identity = 62/121 (51.24%), Postives = 88/121 (72.73%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV++P+NK+IE +L YI+G+GRT +++IL ++ NK KD++EEE+ +R+E+ + Y +EGDLR+ A IRRL EI CYRGIRH +GLP RGQ T+ N RT KG R + K+K Sbjct: 2 ARIAGVDLPSNKKIEIALTYIYGIGRTTSKKILQATGVDPNKRVKDLTEEEISKLREEIENNYKVEGDLRQEVAANIRRLIEIGCYRGIRHKRGLPVRGQRTRCNARTRKGPRKTVGAKRK 122
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_AZOSE (30S ribosomal protein S13 OS=Azoarcus sp. (strain EbN1) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27 Identity = 59/119 (49.58%), Postives = 85/119 (71.43%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 543 AR+ GV IPN+K E +L I+G+GR+RA++I + + KD++E ++ +RDEV+K+++EGDLRR + I+RL ++ CYRG+RH +GLP RGQ T+ N RT KG R AIAGKK Sbjct: 2 ARIAGVNIPNHKHAEIALTAIYGIGRSRAQKICDAANVVRSVKMKDLTESDMERLRDEVAKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKAIAGKK 120
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_LEIXX (30S ribosomal protein S13 OS=Leifsonia xyli subsp. xyli GN=rpsM PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27 Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS-KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 549 AR+ GV+IP KR+E +L YI+GVGRTRA Q L + ++ +I KD+++E+L+++RD + + +EGDLRR A IRR EI Y GIRH +GLP RGQ TK N RT KG + +AGKKKA Sbjct: 2 ARLAGVDIPREKRVEVALTYIYGVGRTRALQTLRETEISGEIRVKDLTDEQLVSLRDYIEGNFKVEGDLRREVAADIRRKVEIGSYEGIRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKA 123
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_DICTD (30S ribosomal protein S13 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27 Identity = 61/121 (50.41%), Postives = 88/121 (72.73%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV++P+NK++E +L YI+G+GRT +++IL ++ NK KD++EEE+ +R+E+ + Y +EGDLR+ A IRRL EI CYRGIRH +GLP RGQ T+ N RT KG R + K+K Sbjct: 2 ARIAGVDLPSNKKVEIALTYIYGIGRTTSKKILQATGVDPNKRVKDLTEEEISKLREEIENNYKVEGDLRQEVAANIRRLIEIGCYRGIRHKRGLPVRGQRTRCNARTRKGPRKTVGAKRK 122
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_AYWBP (30S ribosomal protein S13 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27 Identity = 61/121 (50.41%), Postives = 90/121 (74.38%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGK-RVAIAGKKK 546 AR+ G++IP++KR+ +L YI+G+G + +IL +LK++ I K+++E++L +R E++KY +EGDLRR L I+RL EI YRG+RH +GLP RGQ T+NN T+KGK + AIAGKKK Sbjct: 2 ARIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELKIDQNIRVKNLTEQQLSALRIEITKYNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAAIAGKKK 122
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ZYMMO (30S ribosomal protein S13 OS=Zymomonas mobilis GN=rpsM PE=3 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27 Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV IP NKR+E +L YIHG+G T A++I+ L + + +D+S+ E++ IR+ + + Y +EGDLRR A+ I+RL ++ CYRG+RH +GLP RGQ T N RT KGK IAGKKK Sbjct: 2 ARIAGVNIPTNKRVEIALTYIHGIGPTTAKKIVTKLGIAPERRVQDLSDNEVLQIREAIDADYTVEGDLRRQVAMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGKAKPIAGKKK 122
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_GRAFK (30S ribosomal protein S13 OS=Gramella forsetii (strain KT0803) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27 Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 AR+ GV+IP KR +L YI G+GR+RA++IL K+ E+K D ++E+ IR+ V ++ IEG+LR ++I+RL +I CYRGIRH GLP RGQ TKNN RT KG+R +A KKKA + Sbjct: 2 ARIAGVDIPKQKRGVIALTYIFGIGRSRAQEILAQAKVDESKKVSDWDDDEIGKIREAVGQFTIEGELRTEVQISIKRLMDIGCYRGIRHRAGLPLRGQRTKNNSRTRKGRRKTVANKKKATK 124
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_FINM2 (30S ribosomal protein S13 OS=Finegoldia magna (strain ATCC 29328) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27 Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR 522 AR+ GV++PN+KR+E L I+G+GR + +IL L + + KD++E EL IR+E+ Y+ EGDLRR A+ I+RLKEI CYRG RH +GLP RGQHTKNN RT KG R Sbjct: 2 ARIQGVDLPNDKRVEIGLTAIYGIGRQSSNKILAKLGINPDTRVKDLTESELSDIRNELDNYLTEGDLRRDVAMNIKRLKEINCYRGSRHKKGLPVRGQHTKNNARTRKGPR 113
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_EUBE2 (30S ribosomal protein S13 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=rpsM PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27 Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIR---DEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV++P KRIE L Y++G+GR RA +IL + + + KD+++EE+ I D ++++EGDLRR A+ I+RLKEI CYRGIRH +GLPCRGQ TK N RT KG + +A KKK Sbjct: 2 ARISGVDLPREKRIEIGLTYVYGIGRVRASKILEEAGVNPDTRVKDLTDEEVAKIAKVIDADPEHLVEGDLRREVAMNIKRLKEIGCYRGIRHRKGLPCRGQKTKTNARTCKGPKKTVANKKK 124 The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bpback to top |