FC873239

Overview
NameFC873239
Unique NameFC873239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_DECAR (30S ribosomal protein S13 OS=Dechloromonas aromatica (strain RCB) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 60/119 (50.42%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 543
            AR+ GV IPN++  E +L  I G+GRTRA++I     +   +  KD+S+ ++  +RDEV K+ +EGDLRR   + I+RL ++ CYRG+RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:    2 ARIAGVNIPNHQHAEIALTAIFGIGRTRAQKICDAAGVGRNVKMKDLSDSDMDRLRDEVGKFTVEGDLRREVTMNIKRLMDLGCYRGLRHRKGLPCRGQRTRTNARTRKGPRKAIAGKK 120          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_CHRVO (30S ribosomal protein S13 OS=Chromobacterium violaceum GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 543
            AR+ GV IPN+      LQ I GVG+TRA+QI     +      KD++E E+  +RD+V+K+ +EGDLRR   ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:    2 ARIAGVNIPNHAHAVIGLQAIFGVGQTRAQQICAAASVNPSTKVKDLTEAEMEALRDQVAKFTVEGDLRREITMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_OCEIH (30S ribosomal protein S13 OS=Oceanobacillus iheyensis GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.165e-27
Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ G++IP +KR+  SL YI+GVG+T A+QIL +  + E+   +D++E+EL  IR  V +Y  EGDLRR  +L I+RL EI  YRGIRH +GLP RGQ TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGIDIPRDKRVVISLTYIYGVGKTTAQQILKEAGVSEDTRVRDLTEDELGRIRQAVDQYNTEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQKTKNNSRTRKGPRKTMANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_MYCMS (30S ribosomal protein S13 OS=Mycoplasma mycoides subsp. mycoides SC GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.165e-27
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GVEIPNNKR+  SL YI+G+G   A+ +L  L +   I  KD++EE++  I  E+SKY  EG LRR  +L I+RL EI  YRG+RH +GLP RGQ +K N RT+KG R  +A KKK
Sbjct:    2 ARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISMEISKYKTEGKLRREVSLNIKRLMEIGSYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_CLOAB (30S ribosomal protein S13 OS=Clostridium acetobutylicum GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.165e-27
Identity = 63/122 (51.64%), Postives = 87/122 (71.31%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ G+++P  KR+E  L YI+G+G T +R+I+    +  E ++ KD++EEE+  +RD ++K + IEGDLRR  AL I+RL EI CYRGIRH +GLP RGQ TK N RT KG + A+A KKK
Sbjct:    2 ARIAGIDLPKEKRVEIGLTYIYGIGLTSSRKIIKATSVNPETRV-KDLTEEEVNALRDYINKNFKIEGDLRREVALNIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKKAVASKKK 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRTD (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRT2 (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRT1 (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRS7 (30S ribosomal protein S13 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STREM (30S ribosomal protein S13 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_DECAR3.189e-2750.4230S ribosomal protein S13 OS=Dechloromonas aromati... [more]
RS13_CHRVO3.189e-2751.2630S ribosomal protein S13 OS=Chromobacterium viola... [more]
RS13_OCEIH4.165e-2754.1730S ribosomal protein S13 OS=Oceanobacillus iheyen... [more]
RS13_MYCMS4.165e-2752.5030S ribosomal protein S13 OS=Mycoplasma mycoides s... [more]
RS13_CLOAB4.165e-2751.6430S ribosomal protein S13 OS=Clostridium acetobuty... [more]
RS13_STRTD5.440e-2753.3330S ribosomal protein S13 OS=Streptococcus thermop... [more]
RS13_STRT25.440e-2753.3330S ribosomal protein S13 OS=Streptococcus thermop... [more]
RS13_STRT15.440e-2753.3330S ribosomal protein S13 OS=Streptococcus thermop... [more]
RS13_STRS75.440e-2753.3330S ribosomal protein S13 OS=Streptococcus equi su... [more]
RS13_STREM5.440e-2753.3330S ribosomal protein S13 OS=Streptococcus equi su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bp
CACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAAT
GGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCA
ACGGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTT
TCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGG
AGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACTCGCTTCAGTATA
TTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCAAA
ATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACAAT
TCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGAGGCGGTTCA
ATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGCTACCGCGGAATT
CGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACACAAAGAACAATTG
TCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGCCC
CTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGGATAGGGTTGAT
TTTCTATTGTATTGAATTTGAATGTGAATCATTTTGACTACAAGCTTGGT
TGCTTTCGATTCTGCCGGAGCTTTTGATGTATATGTTTTACTTTTCTTTT
ATGCATTGCATTGATGTTGTGTTTTAAAAAAAAAAAAAAAAAA
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