FC873239

Overview
NameFC873239
Unique NameFC873239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRE4 (30S ribosomal protein S13 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRA5 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype V GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IPN+KR+  SL Y++G+G + +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRA3 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype III GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IPN+KR+  SL Y++G+G + +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRA1 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype Ia GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IPN+KR+  SL Y++G+G + +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_RICBR (30S ribosomal protein S13 OS=Rickettsia bellii (strain RML369-C) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 63/122 (51.64%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK-MENKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 549
            AR+  V IP+NKR+  SL YI+G+G T A+ I    K +E+K  KD++++ELI++R+ + ++Y +EGDLRR   L I++ K+I+ Y+G+RHI+ LP RGQ+T +N RT KGK VAIAGKKKA
Sbjct:    2 ARIASVNIPDNKRLVVSLTYIYGLGTTMAKTICKKAKILEDKKVKDLTDQELISLRNIIENEYKVEGDLRREVTLNIKKKKDIRSYQGLRHIRKLPVRGQNTHSNARTRKGKAVAIAGKKKA 123          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_RICB8 (30S ribosomal protein S13 OS=Rickettsia bellii (strain OSU 85-389) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 63/122 (51.64%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK-MENKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 549
            AR+  V IP+NKR+  SL YI+G+G T A+ I    K +E+K  KD++++ELI++R+ + ++Y +EGDLRR   L I++ K+I+ Y+G+RHI+ LP RGQ+T +N RT KGK VAIAGKKKA
Sbjct:    2 ARIASVNIPDNKRLVVSLTYIYGLGTTMAKTICKKAKILEDKKVKDLTDQELISLRNIIENEYKVEGDLRREVTLNIKKKKDIRSYQGLRHIRKLPVRGQNTHSNARTRKGKAVAIAGKKKA 123          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_CYAP7 (30S ribosomal protein S13 OS=Cyanothece sp. (strain PCC 7424) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 57/123 (46.34%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAP 552
            AR+ GV++P +KR+E +L Y++G+G +R+++IL +  +  +   KD+S+E+ + +R  + + Y IEGDLRR+  + I+RL +I  YRG RH QGLP RGQ T+ N RT +G+R+ +AGKKKAP
Sbjct:    2 ARIAGVDLPRDKRVEIALTYLYGIGLSRSKEILANTGVNPDTRVKDLSDEDALALRSYIEANYQIEGDLRRWETMNIKRLVDIGTYRGRRHRQGLPVRGQRTRTNARTRRGRRLTVAGKKKAP 124          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RR13_GRATL (30S ribosomal protein S13, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps13 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 61/123 (49.59%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  193 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            R+ GV++P NKRIE SL YI+G+G+++A +IL  LK+   I TK++ +E+++ IR  ++  Y IEGDL+R  ++ I+RL  I  YRG RH  GLP RGQ+T+ N RT +G +  +AGKKKAPR
Sbjct:    3 RIVGVDLPKNKRIEISLTYIYGIGKSKAIEILEQLKINRNIKTKELKDEQIVLIRQILNNSYQIEGDLKRVESMNIKRLMTISSYRGKRHQLGLPLRGQNTRTNARTKRGIKKTMAGKKKAPR 125          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.105e-27
Identity = 57/120 (47.50%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  172 GLSIQCARVGGV---EIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR 522
            G+ +Q   +GG    EIP+NKR+ Y+LQ +HG+GR++A+ I+ +L +ENK  KD+S+ EL +IR+ +SKY+I  DL++     + RL  IQCYRGIRH+  LPCRGQ T  N RT + ++
Sbjct:   23 GVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRK 142          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRSY (30S ribosomal protein S13 OS=Streptococcus suis (strain 05ZYH33) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.105e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   +  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_STRE45.440e-2753.3330S ribosomal protein S13 OS=Streptococcus equi su... [more]
RS13_STRA55.440e-2753.3330S ribosomal protein S13 OS=Streptococcus agalact... [more]
RS13_STRA35.440e-2753.3330S ribosomal protein S13 OS=Streptococcus agalact... [more]
RS13_STRA15.440e-2753.3330S ribosomal protein S13 OS=Streptococcus agalact... [more]
RS13_RICBR5.440e-2751.6430S ribosomal protein S13 OS=Rickettsia bellii (st... [more]
RS13_RICB85.440e-2751.6430S ribosomal protein S13 OS=Rickettsia bellii (st... [more]
RS13_CYAP75.440e-2746.3430S ribosomal protein S13 OS=Cyanothece sp. (strai... [more]
RR13_GRATL5.440e-2749.5930S ribosomal protein S13, chloroplastic OS=Gracil... [more]
RT13_SOYBN7.105e-2747.50Small ribosomal subunit protein S13, mitochondrial... [more]
RS13_STRSY7.105e-2752.5030S ribosomal protein S13 OS=Streptococcus suis (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bp
CACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAAT
GGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCA
ACGGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTT
TCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGG
AGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACTCGCTTCAGTATA
TTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCAAA
ATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACAAT
TCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGAGGCGGTTCA
ATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGCTACCGCGGAATT
CGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACACAAAGAACAATTG
TCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGCCC
CTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGGATAGGGTTGAT
TTTCTATTGTATTGAATTTGAATGTGAATCATTTTGACTACAAGCTTGGT
TGCTTTCGATTCTGCCGGAGCTTTTGATGTATATGTTTTACTTTTCTTTT
ATGCATTGCATTGATGTTGTGTTTTAAAAAAAAAAAAAAAAAA
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