FC873239
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRE4 (30S ribosomal protein S13 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27 Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRA5 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype V GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27 Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV+IPN+KR+ SL Y++G+G + +++IL + I KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRA3 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype III GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27 Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV+IPN+KR+ SL Y++G+G + +++IL + I KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRA1 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype Ia GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27 Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV+IPN+KR+ SL Y++G+G + +++IL + I KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_RICBR (30S ribosomal protein S13 OS=Rickettsia bellii (strain RML369-C) GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27 Identity = 63/122 (51.64%), Postives = 91/122 (74.59%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK-MENKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 549 AR+ V IP+NKR+ SL YI+G+G T A+ I K +E+K KD++++ELI++R+ + ++Y +EGDLRR L I++ K+I+ Y+G+RHI+ LP RGQ+T +N RT KGK VAIAGKKKA Sbjct: 2 ARIASVNIPDNKRLVVSLTYIYGLGTTMAKTICKKAKILEDKKVKDLTDQELISLRNIIENEYKVEGDLRREVTLNIKKKKDIRSYQGLRHIRKLPVRGQNTHSNARTRKGKAVAIAGKKKA 123
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_RICB8 (30S ribosomal protein S13 OS=Rickettsia bellii (strain OSU 85-389) GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27 Identity = 63/122 (51.64%), Postives = 91/122 (74.59%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK-MENKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 549 AR+ V IP+NKR+ SL YI+G+G T A+ I K +E+K KD++++ELI++R+ + ++Y +EGDLRR L I++ K+I+ Y+G+RHI+ LP RGQ+T +N RT KGK VAIAGKKKA Sbjct: 2 ARIASVNIPDNKRLVVSLTYIYGLGTTMAKTICKKAKILEDKKVKDLTDQELISLRNIIENEYKVEGDLRREVTLNIKKKKDIRSYQGLRHIRKLPVRGQNTHSNARTRKGKAVAIAGKKKA 123
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_CYAP7 (30S ribosomal protein S13 OS=Cyanothece sp. (strain PCC 7424) GN=rpsM PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27 Identity = 57/123 (46.34%), Postives = 89/123 (72.36%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAP 552 AR+ GV++P +KR+E +L Y++G+G +R+++IL + + + KD+S+E+ + +R + + Y IEGDLRR+ + I+RL +I YRG RH QGLP RGQ T+ N RT +G+R+ +AGKKKAP Sbjct: 2 ARIAGVDLPRDKRVEIALTYLYGIGLSRSKEILANTGVNPDTRVKDLSDEDALALRSYIEANYQIEGDLRRWETMNIKRLVDIGTYRGRRHRQGLPVRGQRTRTNARTRRGRRLTVAGKKKAP 124
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RR13_GRATL (30S ribosomal protein S13, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps13 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27 Identity = 61/123 (49.59%), Postives = 88/123 (71.54%), Query Frame = 1 Query: 193 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555 R+ GV++P NKRIE SL YI+G+G+++A +IL LK+ I TK++ +E+++ IR ++ Y IEGDL+R ++ I+RL I YRG RH GLP RGQ+T+ N RT +G + +AGKKKAPR Sbjct: 3 RIVGVDLPKNKRIEISLTYIYGIGKSKAIEILEQLKINRNIKTKELKDEQIVLIRQILNNSYQIEGDLKRVESMNIKRLMTISSYRGKRHQLGLPLRGQNTRTNARTKRGIKKTMAGKKKAPR 125
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 7.105e-27 Identity = 57/120 (47.50%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 172 GLSIQCARVGGV---EIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR 522 G+ +Q +GG EIP+NKR+ Y+LQ +HG+GR++A+ I+ +L +ENK KD+S+ EL +IR+ +SKY+I DL++ + RL IQCYRGIRH+ LPCRGQ T N RT + ++ Sbjct: 23 GVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRK 142
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_STRSY (30S ribosomal protein S13 OS=Streptococcus suis (strain 05ZYH33) GN=rpsM PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 7.105e-27 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546 AR+ GV+IPN+KR+ SL Y++G+G +++IL + + KD++ ++ IR EV +EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK Sbjct: 2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121 The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bpback to top |