FC873241

Overview
NameFC873241
Unique NameFC873241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTG_PENCH (Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.321e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTG_EMENI (Actin, gamma OS=Emericella nidulans GN=acnA PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.321e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTG_CEPAC (Actin, gamma OS=Cephalosporium acremonium GN=ACT PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.321e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.321e-27
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            E+TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  318 ELTALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT1_PEA (Actin-1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.321e-27
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  317 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT_VOLCA (Actin OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  318 EITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT_SCHDU (Actin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITA+APSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  319 EITAVAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 378
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT_CHLRE (Actin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  318 EITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT2_DROME (Actin-42A OS=Drosophila melanogaster GN=Act42A PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  317 EITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT_THELA (Actin OS=Thermomyces lanuginosus PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            E+TALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMW+SK EYDESGPSIVHRKCF
Sbjct:  316 ELTALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWVSKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of FC873241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ACTG_PENCH5.321e-2793.33Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=... [more]
ACTG_EMENI5.321e-2793.33Actin, gamma OS=Emericella nidulans GN=acnA PE=3 S... [more]
ACTG_CEPAC5.321e-2793.33Actin, gamma OS=Cephalosporium acremonium GN=ACT P... [more]
ACT3_SOLTU5.321e-2795.00Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]
ACT1_PEA5.321e-2796.67Actin-1 OS=Pisum sativum PE=2 SV=1[more]
ACT_VOLCA6.949e-2795.00Actin OS=Volvox carteri PE=3 SV=1[more]
ACT_SCHDU6.949e-2795.00Actin OS=Scherffelia dubia PE=2 SV=1[more]
ACT_CHLRE6.949e-2795.00Actin OS=Chlamydomonas reinhardtii PE=2 SV=1[more]
ACT2_DROME6.949e-2795.00Actin-42A OS=Drosophila melanogaster GN=Act42A PE=... [more]
ACT_THELA9.075e-2791.67Actin OS=Thermomyces lanuginosus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873241 ID=FC873241; Name=FC873241; organism=Citrus clementina; type=EST; length=556bp
GAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCC
ACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCC
TCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCT
GGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGA
TGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGC
GAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTGGGGCCATTGAAG
GAGGCATATCTCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTG
AGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCCTTGCATTCATCT
GGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTTTTTTAAA
GTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCTATT
TCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCAAAAAAAAAAAAA
AAAAAA
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