FC873241

Overview
NameFC873241
Unique NameFC873241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT2_SCHCO (Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 177
            E++ +AP++MK+K+VAPPERKYSVWIGGSILASLSTFQ MW SK EYDESGP IVHRKC
Sbjct:  316 ELSNMAPANMKVKIVAPPERKYSVWIGGSILASLSTFQNMWCSKQEYDESGPGIVHRKC 374          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT_TRYCR (Actin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EI+ LAPSS+K KVVAPPERKYSVWIGGSIL+SL+TFQ MWI K EYDE+GPSIVH KCF
Sbjct:  317 EISNLAPSSIKPKVVAPPERKYSVWIGGSILSSLTTFQTMWIKKSEYDEAGPSIVHNKCF 376          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT5_ARATH (Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 PE=5 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EI ALAP SMKIKVVAPPERKYSVW+GGSILASLS+F  MWI+K EYDE G +IVHRKCF
Sbjct:  319 EINALAPPSMKIKVVAPPERKYSVWVGGSILASLSSFAPMWITKAEYDEQGGAIVHRKCF 378          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT2_NAEFO (Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            E+T +AP+SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EY+++GP IVHR+ F
Sbjct:  312 ELTNMAPASMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKEEYEDAGPGIVHRESF 371          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT1_TRYBB (Actin A OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EI+ L PSS+K KVVAPPERKYSVWIGGSIL+SL+TFQ MWI+K EYDESGPSIVH KCF
Sbjct:  317 EISNLPPSSIKPKVVAPPERKYSVWIGGSILSSLTTFQSMWITKSEYDESGPSIVHSKCF 376          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT_COPC7 (Actin OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.153e-22
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            E+ AL+P+SM++K+VAP ERKYSVWIGGSILASLSTFQ +W SK EYDESGP IVHRKCF
Sbjct:  316 ELLALSPASMRVKIVAPLERKYSVWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT1_NAEGR (Actin-1 OS=Naegleria gruberi GN=ACT1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.958e-21
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            E+TA+AP+SMKI+VVAPPERKYSVWIGGSIL+SLSTFQ MWI+  EY+++G  IVHRKCF
Sbjct:  315 ELTAMAPASMKIRVVAPPERKYSVWIGGSILSSLSTFQSMWITAEEYEDAGCGIVHRKCF 374          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT4_LYTPI (Actin, cytoskeletal 4 (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.269e-20
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 156
            EIT+LAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGP
Sbjct:  103 EITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 154          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT9_ARATH (Putative actin-9 OS=Arabidopsis thaliana GN=ACT9 PE=5 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.833e-19
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 177
            E+ AL PSSMK+KVV PPE + SVWIGGSILASLSTF QMWI+K EY+E G +IVHRKC
Sbjct:  307 ELNALVPSSMKVKVVVPPESECSVWIGGSILASLSTFHQMWITKDEYEEHGAAIVHRKC 365          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTD_PHYPO (Actin, spherule isoform OS=Physarum polycephalum GN=ARDD PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            E+TA  P+ MKIK++APP R+YS WIGGSILASLSTF+QM ISK EY+E GPSIVHRKCF
Sbjct:  309 ELTAFEPT-MKIKIIAPPGRQYSAWIGGSILASLSTFEQMCISKKEYNECGPSIVHRKCF 367          
The following BLAST results are available for this feature:
BLAST of FC873241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ACT2_SCHCO1.771e-2279.66Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1[more]
ACT_TRYCR2.313e-2281.67Actin OS=Trypanosoma cruzi PE=3 SV=1[more]
ACT5_ARATH3.021e-2281.67Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 P... [more]
ACT2_NAEFO3.021e-2280.00Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1[more]
ACT1_TRYBB3.021e-2281.67Actin A OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT_COPC75.153e-2278.33Actin OS=Coprinopsis cinerea (strain Okayama-7 / 1... [more]
ACT1_NAEGR1.958e-2176.67Actin-1 OS=Naegleria gruberi GN=ACT1 PE=3 SV=1[more]
ACT4_LYTPI1.269e-2088.46Actin, cytoskeletal 4 (Fragment) OS=Lytechinus pic... [more]
ACT9_ARATH1.833e-1974.58Putative actin-9 OS=Arabidopsis thaliana GN=ACT9 P... [more]
ACTD_PHYPO6.965e-1975.00Actin, spherule isoform OS=Physarum polycephalum G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873241 ID=FC873241; Name=FC873241; organism=Citrus clementina; type=EST; length=556bp
GAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCC
ACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCC
TCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCT
GGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGA
TGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGC
GAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTGGGGCCATTGAAG
GAGGCATATCTCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTG
AGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCCTTGCATTCATCT
GGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTTTTTTAAA
GTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCTATT
TCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCAAAAAAAAAAAAA
AAAAAA
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