FC873241

Overview
NameFC873241
Unique NameFC873241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ARP4_ASPFU (Actin-related protein 4 OS=Aspergillus fumigatus GN=arp4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   55 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 177
            ERK+  W+GGSILASL TF QMWISK EYDE GP+IV ++C
Sbjct:  425 ERKFGSWVGGSILASLGTFHQMWISKKEYDEHGPNIVEKRC 465          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTT1_RAT (Actin-related protein T1 OS=Rattus norvegicus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            E+  LA     IK+ A P+R YS WIGGS++ SL+TF+QMW++  ++ E G  +V RKCF
Sbjct:  317 ELEVLAFEGTPIKITASPDRCYSAWIGGSVMTSLTTFKQMWVTAEDFKEYGAFVVQRKCF 376          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTT1_MACFA (Actin-related protein T1 OS=Macaca fascicularis GN=ACTRT1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            E+  LA     IK+ A P+R +S WIG SI+ S+S+F+QMW++  ++ E G S+V R+CF
Sbjct:  316 EVEQLASKGTPIKITASPDRCFSAWIGASIMTSMSSFKQMWVTSADFKEYGTSVVQRRCF 375          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTT1_HUMAN (Actin-related protein T1 OS=Homo sapiens GN=ACTRT1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            E+  LA     IK+ A P+R +S WIG SI+ S+S+F+QMW++  ++ E G S+V R+CF
Sbjct:  317 EVEQLASKGTPIKITASPDRCFSAWIGASIMTSMSSFKQMWVTSADFKEYGTSVVQRRCF 376          
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT_DICVI (Actin (Fragment) OS=Dictyocaulus viviparus PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1
Query:   85 SILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            SILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:    2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 33          
The following BLAST results are available for this feature:
BLAST of FC873241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ARP4_ASPFU2.399e-1170.73Actin-related protein 4 OS=Aspergillus fumigatus G... [more]
ACTT1_RAT2.399e-1148.33Actin-related protein T1 OS=Rattus norvegicus GN=A... [more]
ACTT1_MACFA5.345e-1145.00Actin-related protein T1 OS=Macaca fascicularis GN... [more]
ACTT1_HUMAN5.345e-1145.00Actin-related protein T1 OS=Homo sapiens GN=ACTRT1... [more]
ACT_DICVI9.118e-1196.88Actin (Fragment) OS=Dictyocaulus viviparus PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873241 ID=FC873241; Name=FC873241; organism=Citrus clementina; type=EST; length=556bp
GAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCC
ACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCC
TCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCT
GGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGA
TGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGC
GAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTGGGGCCATTGAAG
GAGGCATATCTCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTG
AGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCCTTGCATTCATCT
GGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTTTTTTAAA
GTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCTATT
TCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCAAAAAAAAAAAAA
AAAAAA
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