FC873241

Overview
NameFC873241
Unique NameFC873241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTB_MACFA (Actin, cytoplasmic 1 OS=Macaca fascicularis GN=ACTB PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTB_HUMAN (Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTB_HORSE (Actin, cytoplasmic 1 OS=Equus caballus GN=ACTB PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTB_CHICK (Actin, cytoplasmic 1 OS=Gallus gallus GN=ACTB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTB_CERPY (Actin, cytoplasmic 1 OS=Cercopithecus pygerythrus GN=ACTB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  302 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 361
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTB_CERAE (Actin, cytoplasmic 1 OS=Cercopithecus aethiops GN=ACTB PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTB_CAVPO (Actin, cytoplasmic 1 OS=Cavia porcellus GN=ACTB PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTB_CANFA (Actin, cytoplasmic 1 OS=Canis familiaris GN=ACTB PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTB_CAMDR (Actin, cytoplasmic 1 OS=Camelus dromedarius GN=ACTB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACTB_BOVIN (Actin, cytoplasmic 1 OS=Bos taurus GN=ACTB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  316 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of FC873241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ACTB_MACFA9.075e-2793.33Actin, cytoplasmic 1 OS=Macaca fascicularis GN=ACT... [more]
ACTB_HUMAN9.075e-2793.33Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 ... [more]
ACTB_HORSE9.075e-2793.33Actin, cytoplasmic 1 OS=Equus caballus GN=ACTB PE=... [more]
ACTB_CHICK9.075e-2793.33Actin, cytoplasmic 1 OS=Gallus gallus GN=ACTB PE=1... [more]
ACTB_CERPY9.075e-2793.33Actin, cytoplasmic 1 OS=Cercopithecus pygerythrus ... [more]
ACTB_CERAE9.075e-2793.33Actin, cytoplasmic 1 OS=Cercopithecus aethiops GN=... [more]
ACTB_CAVPO9.075e-2793.33Actin, cytoplasmic 1 OS=Cavia porcellus GN=ACTB PE... [more]
ACTB_CANFA9.075e-2793.33Actin, cytoplasmic 1 OS=Canis familiaris GN=ACTB P... [more]
ACTB_CAMDR9.075e-2793.33Actin, cytoplasmic 1 OS=Camelus dromedarius GN=ACT... [more]
ACTB_BOVIN9.075e-2793.33Actin, cytoplasmic 1 OS=Bos taurus GN=ACTB PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873241 ID=FC873241; Name=FC873241; organism=Citrus clementina; type=EST; length=556bp
GAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCC
ACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCC
TCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCT
GGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGA
TGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGC
GAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTGGGGCCATTGAAG
GAGGCATATCTCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTG
AGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCCTTGCATTCATCT
GGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTTTTTTAAA
GTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCTATT
TCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCAAAAAAAAAAAAA
AAAAAA
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