FC873271

Overview
NameFC873271
Unique NameFC873271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSM (ATP synthase subunit beta OS=Magnetococcus sp. (strain MC-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.798e-53
Identity = 105/159 (66.04%), Postives = 123/159 (77.36%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            G+V QV+G VVDVRF+  LP IL AL +V +  RLVLEVA HMGEG VR IAMD T+G+VRG  V +TG  I VPVGR TLGRI+NV+GEP DEKG ++T   LPIHR APAF +QAT  +IL TGIKV+DLLAPY +GGK+GLFGGAGVGK  L+  L
Sbjct:    7 GKVVQVVGPVVDVRFEGELPNILNALHMVRNGERLVLEVATHMGEGTVRAIAMDSTDGVVRGMEVTDTGDTIRVPVGRQTLGRILNVVGEPQDEKGPVETTETLPIHRPAPAFAQQATSAEILETGIKVIDLLAPYAKGGKVGLFGGAGVGKTVLIMEL 165          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_SCHPO (ATP synthase subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=atp2 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.266e-53
Identity = 110/166 (66.27%), Postives = 130/166 (78.31%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEG--LPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            K + G + QVIGAVVD +F++   LP IL ALEV +  + RLVLEVAQH+GE  VRTIAMDGTEGLVRG  V++TGSPI++PVG  TLGRIMNVIGEP+DE+G +K   Y PIH +AP+F EQ+T  +IL TGIKVVDLLAPY RGGKIGLFGGAGVGK   +  L
Sbjct:   51 KHNKGSIKQVIGAVVDCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQEL 216          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHILO (ATP synthase subunit beta OS=Rhizobium loti GN=atpD PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.184e-53
Identity = 107/162 (66.05%), Postives = 126/162 (77.78%), Query Frame = 3
Query:  279 GSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            G +G+V QVIGAVVDV+F + LP IL ALE  +   RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +TG+PITVPVG   LGRI+NVIGEP+DE+G +       IH+ AP +VEQ+TE QIL+TGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    7 GVVGKVRQVIGAVVDVQFGDHLPAILNALETTNVGNRLVLEVAQHLGENTVRCIAMDSTEGLVRGQEVRDTGAPITVPVGPGMLGRIINVIGEPVDEEGPVDAIEMRSIHQPAPTYVEQSTEAQILITGIKVLDLLAPYAKGGKIGLFGGAGVGKTVLIQEL 168          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_KLULA (ATP synthase subunit beta, mitochondrial OS=Kluyveromyces lactis GN=ATP2 PE=3 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 8.184e-53
Identity = 107/162 (66.05%), Postives = 129/162 (79.63%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            S G+V  VIGA+VDV+F++G LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGLVRG+ V +TG+PI+VPVGR TLGRI+NVIGEPIDE+G + ++   PIH + P FVEQ+T  ++L TGIKVVDLLAPY RGGKIGLFGGAGVGK   +  L
Sbjct:   36 SQGKVRAVIGAIVDVQFEQGQLPAILNALEIDTPEGKLVLEVAQHLGENTVRTIAMDGTEGLVRGENVSDTGAPISVPVGRETLGRIINVIGEPIDERGPINSKMRKPIHADPPLFVEQSTAAEVLETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQEL 197          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_BARHE (ATP synthase subunit beta OS=Bartonella henselae GN=atpD PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.396e-52
Identity = 105/163 (64.42%), Postives = 127/163 (77.91%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            + ++G + QVIGAVVDV+F+  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD T+GLVRGQ+V +TG+ I+VPVG  TLGRIMNVIGEP+D  G + T     IH+EAP +VEQ+T  +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGK  L+  L
Sbjct:   54 EAAVGVIKQVIGAVVDVQFEGPLPNILNALETDNLGNRLVLEVAQHLGENTVRTIAMDTTDGLVRGQKVFDTGTQISVPVGEATLGRIMNVIGEPVDNVGPIATSKTRSIHQEAPEYVEQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMEL 216          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_SPHAL (ATP synthase subunit beta OS=Sphingopyxis alaskensis GN=atpD PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.110e-52
Identity = 104/159 (65.41%), Postives = 126/159 (79.25%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            G++ QVIGAVVDV+F   LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD T+GL RGQ V +TG+ I+VPVG  TLGRI+NVIGEPIDE+G + ++   PIH +AP FV+Q+TE  ILVTGIKV+DL+APY +GGKIGLFGGAGVGK  L+  L
Sbjct:   41 GRIAQVIGAVVDVQFTGELPAILNALETDNNGNRLVLEVAQHLGENTVRTIAMDATDGLTRGQPVRDTGAQISVPVGPQTLGRILNVIGEPIDERGPVNSDMTAPIHAKAPEFVDQSTEASILVTGIKVIDLIAPYAKGGKIGLFGGAGVGKTVLIQEL 199          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSL (ATP synthase subunit beta OS=Geobacter sulfurreducens GN=atpD PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.110e-52
Identity = 108/167 (64.67%), Postives = 125/167 (74.85%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            + G++ QVIGAV+DV F+ G LPPI  AL V      D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ VL+TG  I+VPVGR TLGRI+NVIGEP+DE G +  E    IHREAPAFV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGK  L+  L
Sbjct:    4 NFGKISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENAVRTIAMDSTDGLVRGQAVLDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHREAPAFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMEL 170          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_PARDP (ATP synthase subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=atpD PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.305e-52
Identity = 104/159 (65.41%), Postives = 122/159 (76.73%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            G++ QVIGAVVDV+FD  LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG PI VPVG  TLGRI+NV+GEP+DE G ++      IH++AP F  QAT  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    6 GKITQVIGAVVDVQFDGQLPAILNALETENNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGLPVKDTGGPIMVPVGDATLGRILNVVGEPVDEGGPVEATQTRAIHQQAPDFAAQATASEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMEL 164          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_BARQU (ATP synthase subunit beta OS=Bartonella quintana GN=atpD PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.305e-52
Identity = 103/163 (63.19%), Postives = 126/163 (77.30%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            KG++G++ QVIGAVVDV+F+  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD T+GL RGQ+V +T + I VPVG  TLGRIMNVIGEP+D  G + T     IH++AP +V+Q+T  +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGK  L+  L
Sbjct:   59 KGAVGEIKQVIGAVVDVQFEGALPNILNALETENLGNRLVLEVAQHLGENTVRTIAMDTTDGLTRGQKVFDTETQICVPVGEATLGRIMNVIGEPVDNVGPIATTKTRSIHQKAPEYVDQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMEL 221          
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHOBL (ATP synthase subunit beta OS=Rhodopseudomonas blastica GN=atpD PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.048e-52
Identity = 103/161 (63.98%), Postives = 125/161 (77.64%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764
            S G+V QVIGAVVDV+F+  LP IL ALE  ++  +L+LEVAQH+GE  VR IAMD TEGLVRG  V ++G+PI+VPVG  TLGRI+NV+GEPIDE+G +       IH++AP F  Q+TE QILVTGIKV+DLLAPY +GGKIGLFGGAGVGK  L+  L
Sbjct:    8 SKGKVTQVIGAVVDVQFEGVLPAILNALETTNNGKKLILEVAQHLGENTVRCIAMDATEGLVRGAPVSDSGTPISVPVGNATLGRILNVVGEPIDERGPIAATEKRAIHQKAPDFQSQSTESQILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIQEL 168          
The following BLAST results are available for this feature:
BLAST of FC873271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_MAGSM4.798e-5366.04ATP synthase subunit beta OS=Magnetococcus sp. (st... [more]
ATPB_SCHPO6.266e-5366.27ATP synthase subunit beta, mitochondrial OS=Schizo... [more]
ATPB_RHILO8.184e-5366.05ATP synthase subunit beta OS=Rhizobium loti GN=atp... [more]
ATPB_KLULA8.184e-5366.05ATP synthase subunit beta, mitochondrial OS=Kluyve... [more]
ATPB_BARHE1.396e-5264.42ATP synthase subunit beta OS=Bartonella henselae G... [more]
ATPB_SPHAL3.110e-5265.41ATP synthase subunit beta OS=Sphingopyxis alaskens... [more]
ATPB_GEOSL3.110e-5264.67ATP synthase subunit beta OS=Geobacter sulfurreduc... [more]
ATPB_PARDP5.305e-5265.41ATP synthase subunit beta OS=Paracoccus denitrific... [more]
ATPB_BARQU5.305e-5263.19ATP synthase subunit beta OS=Bartonella quintana G... [more]
ATPB_RHOBL9.048e-5263.98ATP synthase subunit beta OS=Rhodopseudomonas blas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BA12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873271 ID=FC873271; Name=FC873271; organism=Citrus clementina; type=EST; length=784bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAACTGTGCT
TATTATGGAACTTATAACAATGTTGCAAGGCTCA
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