FC873271
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSM (ATP synthase subunit beta OS=Magnetococcus sp. (strain MC-1) GN=atpD PE=3 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 4.798e-53 Identity = 105/159 (66.04%), Postives = 123/159 (77.36%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764 G+V QV+G VVDVRF+ LP IL AL +V + RLVLEVA HMGEG VR IAMD T+G+VRG V +TG I VPVGR TLGRI+NV+GEP DEKG ++T LPIHR APAF +QAT +IL TGIKV+DLLAPY +GGK+GLFGGAGVGK L+ L Sbjct: 7 GKVVQVVGPVVDVRFEGELPNILNALHMVRNGERLVLEVATHMGEGTVRAIAMDSTDGVVRGMEVTDTGDTIRVPVGRQTLGRILNVVGEPQDEKGPVETTETLPIHRPAPAFAQQATSAEILETGIKVIDLLAPYAKGGKVGLFGGAGVGKTVLIMEL 165
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_SCHPO (ATP synthase subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=atp2 PE=1 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 6.266e-53 Identity = 110/166 (66.27%), Postives = 130/166 (78.31%), Query Frame = 3 Query: 276 KGSIGQVCQVIGAVVDVRFDEG--LPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764 K + G + QVIGAVVD +F++ LP IL ALEV + + RLVLEVAQH+GE VRTIAMDGTEGLVRG V++TGSPI++PVG TLGRIMNVIGEP+DE+G +K Y PIH +AP+F EQ+T +IL TGIKVVDLLAPY RGGKIGLFGGAGVGK + L Sbjct: 51 KHNKGSIKQVIGAVVDCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQEL 216
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHILO (ATP synthase subunit beta OS=Rhizobium loti GN=atpD PE=3 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 8.184e-53 Identity = 107/162 (66.05%), Postives = 126/162 (77.78%), Query Frame = 3 Query: 279 GSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764 G +G+V QVIGAVVDV+F + LP IL ALE + RLVLEVAQH+GE VR IAMD TEGLVRGQ V +TG+PITVPVG LGRI+NVIGEP+DE+G + IH+ AP +VEQ+TE QIL+TGIKV+DLLAPY +GGKIGLFGGAGVGK L+ L Sbjct: 7 GVVGKVRQVIGAVVDVQFGDHLPAILNALETTNVGNRLVLEVAQHLGENTVRCIAMDSTEGLVRGQEVRDTGAPITVPVGPGMLGRIINVIGEPVDEEGPVDAIEMRSIHQPAPTYVEQSTEAQILITGIKVLDLLAPYAKGGKIGLFGGAGVGKTVLIQEL 168
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_KLULA (ATP synthase subunit beta, mitochondrial OS=Kluyveromyces lactis GN=ATP2 PE=3 SV=2) HSP 1 Score: 207.223 bits (526), Expect = 8.184e-53 Identity = 107/162 (66.05%), Postives = 129/162 (79.63%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764 S G+V VIGA+VDV+F++G LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGLVRG+ V +TG+PI+VPVGR TLGRI+NVIGEPIDE+G + ++ PIH + P FVEQ+T ++L TGIKVVDLLAPY RGGKIGLFGGAGVGK + L Sbjct: 36 SQGKVRAVIGAIVDVQFEQGQLPAILNALEIDTPEGKLVLEVAQHLGENTVRTIAMDGTEGLVRGENVSDTGAPISVPVGRETLGRIINVIGEPIDERGPINSKMRKPIHADPPLFVEQSTAAEVLETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQEL 197
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_BARHE (ATP synthase subunit beta OS=Bartonella henselae GN=atpD PE=3 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.396e-52 Identity = 105/163 (64.42%), Postives = 127/163 (77.91%), Query Frame = 3 Query: 276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764 + ++G + QVIGAVVDV+F+ LP IL ALE + RLVLEVAQH+GE VRTIAMD T+GLVRGQ+V +TG+ I+VPVG TLGRIMNVIGEP+D G + T IH+EAP +VEQ+T +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGK L+ L Sbjct: 54 EAAVGVIKQVIGAVVDVQFEGPLPNILNALETDNLGNRLVLEVAQHLGENTVRTIAMDTTDGLVRGQKVFDTGTQISVPVGEATLGRIMNVIGEPVDNVGPIATSKTRSIHQEAPEYVEQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMEL 216
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_SPHAL (ATP synthase subunit beta OS=Sphingopyxis alaskensis GN=atpD PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 3.110e-52 Identity = 104/159 (65.41%), Postives = 126/159 (79.25%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764 G++ QVIGAVVDV+F LP IL ALE ++ RLVLEVAQH+GE VRTIAMD T+GL RGQ V +TG+ I+VPVG TLGRI+NVIGEPIDE+G + ++ PIH +AP FV+Q+TE ILVTGIKV+DL+APY +GGKIGLFGGAGVGK L+ L Sbjct: 41 GRIAQVIGAVVDVQFTGELPAILNALETDNNGNRLVLEVAQHLGENTVRTIAMDATDGLTRGQPVRDTGAQISVPVGPQTLGRILNVIGEPIDERGPVNSDMTAPIHAKAPEFVDQSTEASILVTGIKVIDLIAPYAKGGKIGLFGGAGVGKTVLIQEL 199
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSL (ATP synthase subunit beta OS=Geobacter sulfurreducens GN=atpD PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 3.110e-52 Identity = 108/167 (64.67%), Postives = 125/167 (74.85%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764 + G++ QVIGAV+DV F+ G LPPI AL V D LVLEVAQH+GE VRTIAMD T+GLVRGQ VL+TG I+VPVGR TLGRI+NVIGEP+DE G + E IHREAPAFV+Q+T+ + TGIKVVDLLAPY RGGKIGLFGGAGVGK L+ L Sbjct: 4 NFGKISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENAVRTIAMDSTDGLVRGQAVLDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHREAPAFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMEL 170
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_PARDP (ATP synthase subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=atpD PE=3 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 5.305e-52 Identity = 104/159 (65.41%), Postives = 122/159 (76.73%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764 G++ QVIGAVVDV+FD LP IL ALE ++ RLVLEVAQH+GE VRTIAMD TEGLVRG V +TG PI VPVG TLGRI+NV+GEP+DE G ++ IH++AP F QAT +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGK L+ L Sbjct: 6 GKITQVIGAVVDVQFDGQLPAILNALETENNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGLPVKDTGGPIMVPVGDATLGRILNVVGEPVDEGGPVEATQTRAIHQQAPDFAAQATASEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMEL 164
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_BARQU (ATP synthase subunit beta OS=Bartonella quintana GN=atpD PE=3 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 5.305e-52 Identity = 103/163 (63.19%), Postives = 126/163 (77.30%), Query Frame = 3 Query: 276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764 KG++G++ QVIGAVVDV+F+ LP IL ALE + RLVLEVAQH+GE VRTIAMD T+GL RGQ+V +T + I VPVG TLGRIMNVIGEP+D G + T IH++AP +V+Q+T +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGK L+ L Sbjct: 59 KGAVGEIKQVIGAVVDVQFEGALPNILNALETENLGNRLVLEVAQHLGENTVRTIAMDTTDGLTRGQKVFDTETQICVPVGEATLGRIMNVIGEPVDNVGPIATTKTRSIHQKAPEYVDQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMEL 221
BLAST of FC873271 vs. ExPASy Swiss-Prot
Match: ATPB_RHOBL (ATP synthase subunit beta OS=Rhodopseudomonas blastica GN=atpD PE=3 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 9.048e-52 Identity = 103/161 (63.98%), Postives = 125/161 (77.64%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNL 764 S G+V QVIGAVVDV+F+ LP IL ALE ++ +L+LEVAQH+GE VR IAMD TEGLVRG V ++G+PI+VPVG TLGRI+NV+GEPIDE+G + IH++AP F Q+TE QILVTGIKV+DLLAPY +GGKIGLFGGAGVGK L+ L Sbjct: 8 SKGKVTQVIGAVVDVQFEGVLPAILNALETTNNGKKLILEVAQHLGENTVRCIAMDATEGLVRGAPVSDSGTPISVPVGNATLGRILNVVGEPIDERGPIAATEKRAIHQKAPDFQSQSTESQILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIQEL 168 The following BLAST results are available for this feature:
BLAST of FC873271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873271 ID=FC873271; Name=FC873271; organism=Citrus clementina; type=EST; length=784bpback to top |