FC873277

Overview
NameFC873277
Unique NameFC873277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y4265_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.257e-14
Identity = 54/185 (29.19%), Postives = 78/185 (42.16%), Query Frame = 3
Query:   18 VLVAIILDCFAYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVA-------------------------SVTLSSMNFSGTLSPRIG------------------------VLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +L    + CF+     D QG AL + ++ L +  +    W+    +PC W  V C+    V+                         S+TLSS+N +G +   IG                         L+ L TL+L  N + G IP E+GNLS L  L L +N+L G+IP S+G LK LQ L
Sbjct:   14 LLCFFFIPCFSL----DQQGQALLSWKSQLNISGDAFSSWHVADTSPCNWVGVKCNRRGEVSEIQLKGMDLQGSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSGDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFDNKLSGEIPRSIGELKNLQVL 194          

HSP 2 Score: 68.1662 bits (165), Expect = 5.753e-11
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 3
Query:  195 NVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            N+  + L S + SG + P IG    L  L L GN + G IP E+GNL +L  +D+  NRLVG IPP++   + L+FL
Sbjct:  431 NLTKLLLLSNDLSGFIPPDIGNCTNLYRLRLNGNRLAGSIPSEIGNLKNLNFVDISENRLVGSIPPAISGCESLEFL 507          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.257e-14
Identity = 48/139 (34.53%), Postives = 63/139 (45.32%), Query Frame = 3
Query:   75 GDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICD-NSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNG------------------------ITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            G+AL + R  +   +  +  W     +PC W  V CD  +  V +++L+     G L P +G L  L  L L  N                         ITG IP E+GNLS L +LDL NN L G IP SLG LK+L
Sbjct:   33 GEALLSFRNGVLASDGVIGLWRPEDPDPCNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRL 171          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y4361_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.483e-14
Identity = 47/139 (33.81%), Postives = 69/139 (49.64%), Query Frame = 3
Query:    6 SVKLVLVAIILDCFAYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQ-VNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQ 419
            S+  + + I     +Y   S  + DAL A + +L  P   L  W+ +    PC W  V C N + V  + L  +  SG +S RI  LR L  L+L+ N   G IP  L   + L S+ L+ N L GK+PP++ NL  L+
Sbjct:    6 SLFFIFLVIYAPLVSYADESQAEIDALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGCTN-HRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLE 143          

HSP 2 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  165 WSNVICDNSNNVAS---VTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +S V+ +  +++ S   V LSS +FSG +    G LR L +L+L  N I+G IP E+GN S+L  L+L +NRL+G IP  L  L +L+ L
Sbjct:  536 FSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVL 625          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: HSL1_ARATH (Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 48/142 (33.80%), Postives = 66/142 (46.48%), Query Frame = 3
Query:   75 GDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNS-NNVASVTLSSMNFSG------------------------TLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            G  L  ++ SL  P++ L  WN N  +PC WS V C    ++V SV LSS N +G                        TL   I   ++L TL L  N +TGE+P+ L ++ +L  LDL  N   G IP S G  + L+ L
Sbjct:   20 GFILQQVKLSLDDPDSYLSSWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTLADIPTLVHLDLTGNNFSGDIPASFGKFENLEVL 161          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 41/140 (29.29%), Postives = 73/140 (52.14%), Query Frame = 3
Query:    9 VKLVLVAIILDCF-AYLALSDYQGDALFALRTSLRV---PNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            +++ L+++I   F + L+ S    D L  ++    V   P + L+ WN    +PC+W  + C+N + V +++L +    G++   +G L TL +L L  N   G +P    N   L  LDL +N + G+IP ++G+L  L
Sbjct:    1 MRMELISVIFFFFCSVLSSSALNSDGLVLMKFKSSVLVDPLSLLQTWNYKHESPCSWRGISCNNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNL 140          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: MRH1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 51/135 (37.78%), Postives = 71/135 (52.59%), Query Frame = 3
Query:   30 IILDCFAYLALS-DYQGDALFALRTSLRV-PNNQLRDWNQNQVNP-CTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +I+   A L+LS   QG AL   R  +   P+  L +WN + +N  C WS V C +   V  + LS  +  GTL+P +  L  L +L L  N  +G IP+E G+  +L  LDL  N L G+IPP L N   L+ L
Sbjct:   14 LIIGLQAPLSLSLTSQGSALLKFRARVNSDPHGTLANWNVSGINDLCYWSGVTCVDGK-VQILDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIPKEYGSFENLEVLDLRENDLSGQIPPELSNGLSLKHL 147          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13
Identity = 40/123 (32.52%), Postives = 65/123 (52.85%), Query Frame = 3
Query:   42 CFAYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCT-WSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNL 407
            C +     D +  +L  + +S   P      W  N  +PCT W  + C N N +  ++L  M  +GT+SP  G +++L  + L  N +TG IP+EL  L +L +LD+ +N+L GK+P    N+
Sbjct:  314 CLSSPGECDPRVKSLLLIASSFDYPPRLAESWKGN--DPCTNWIGIACSNGN-ITVISLEKMELTGTISPEFGAIKSLQRIILGINNLTGMIPQELTTLPNLKTLDVSSNKLFGKVPGFRSNV 433          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: CLV1_ARATH (Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 54/157 (34.39%), Postives = 76/157 (48.41%), Query Frame = 3
Query:   42 CFAYLALSDYQGDALFALRTSLRVPNNQ-LRDW--NQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSL---------------------DLE-----NNRLVGKIPPSLGNLKKLQFL 425
            CFAY  +     + L  L++S+  P    L DW  + +    C++S V CD+   V S+ +S     GT+SP IG+L  L  LTL  N  TGE+P E+ +L+SL  L                     DLE     NN   GK+PP +  LKKL++L
Sbjct:   22 CFAYTDM-----EVLLNLKSSMIGPKGHGLHDWIHSSSPDAHCSFSGVSCDDDARVISLNVSFTPLFGTISPEIGMLTHLVNLTLAANNFTGELPLEMKSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYL 173          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.146e-13
Identity = 52/146 (35.62%), Postives = 71/146 (48.63%), Query Frame = 3
Query:   18 VLVAIILDCFAYLALSDYQGDALFALRTSLRVPNN---------QLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNL-SSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            VL+A+   CF+   L   Q      L+T L + N+          LRDWN    + C W+ V C     +  + LS +  +G++SP IG    L  + L  N + G IP  L NL SSL SL L +N L G IP  LG+L  L+ L
Sbjct:    6 VLLALFFLCFSS-GLGSGQPGQRDDLQTLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVTC-GGREIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSL 149          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y1341_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.369e-12
Identity = 51/148 (34.46%), Postives = 65/148 (43.92%), Query Frame = 3
Query:   54 LALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVT------------------------LSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L+LS   G AL +L+   R   +    W+     PC+W  + C   N V SV+                        LSS N SG + P  G L  L  L L  N ++G IP ELG LS+L  L L  N+L G IP  + NL  LQ L
Sbjct:   25 LSLSS-DGQALLSLK---RPSPSLFSSWDPQDQTPCSWYGITCSADNRVISVSIPDTFLNLSSIPDLSSLSSLQFLNLSSTNLSGPIPPSFGKLTHLRLLDLSSNSLSGPIPSELGRLSTLQFLILNANKLSGSIPSQISNLFALQVL 168          
The following BLAST results are available for this feature:
BLAST of FC873277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
Y4265_ARATH4.257e-1429.19Probable LRR receptor-like serine/threonine-protei... [more]
FEI2_ARATH4.257e-1434.53LRR receptor-like serine/threonine-protein kinase ... [more]
Y4361_ARATH9.483e-1433.81Probable LRR receptor-like serine/threonine-protei... [more]
HSL1_ARATH1.238e-1333.80Receptor-like protein kinase HSL1 OS=Arabidopsis t... [more]
Y4372_ARATH2.112e-1329.29Probable LRR receptor-like serine/threonine-protei... [more]
MRH1_ARATH2.112e-1337.78Probable LRR receptor-like serine/threonine-protei... [more]
TMK1_ARATH3.603e-1332.52Probable receptor protein kinase TMK1 OS=Arabidops... [more]
CLV1_ARATH4.706e-1334.39Receptor protein kinase CLAVATA1 OS=Arabidopsis th... [more]
GSO2_ARATH6.146e-1335.62LRR receptor-like serine/threonine-protein kinase ... [more]
Y1341_ARATH1.369e-1234.46Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BB07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873277 ID=FC873277; Name=FC873277; organism=Citrus clementina; type=EST; length=766bp
TGAATAGCGTGAAGTTGGTCCTTGTTGCTATAATATTGGATTGCTTCGCT
TATTTGGCGCTGTCTGATTATCAAGGAGATGCACTATTTGCATTGAGGAC
TTCATTGCGTGTTCCAAACAATCAGCTAAGAGATTGGAATCAGAACCAAG
TTAATCCTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTT
GCCTCTGTAACATTGTCTTCCATGAACTTTTCTGGAACCTTGTCCCCAAG
AATAGGAGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCA
TAACTGGTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGC
TTGGACTTGGAAAATAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGG
CAATCTTAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTT
TAGTTTTAATCTATATGGTTTTTCTTCACTTTTTTCATGATCTGGCACAA
AAAGTCTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACA
ATTTTAGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTGATC
AGTATTCAGCTGGATTCGAATAATCTCAGTGGTCAAATTCCAGTGCATTT
GTTCCAAATTCCAAAATACAATTTCACGGGAAACAACTTGAACTGTGGTA
AAACTCTTCCACATTCTTGTGAATCTAGTACCAATGATTCAGGGAGTTCA
AAAAACCCAAGATTGG
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