FC873277

Overview
NameFC873277
Unique NameFC873277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y4885_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.513e-11
Identity = 49/162 (30.25%), Postives = 77/162 (47.53%), Query Frame = 3 
Query:   15 LVLVAIILDCFAYLALSDYQGDALFALRTSL--RVPNNQLRDW-NQNQVNPCT-WSNVICDNSN------------------------NVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 416
            L++++I+L C   ++ +  + +AL   +++   +  +++L  W N N  + CT W  V C   +                        N+  V LS   FSGT+SP  G    L    L  N + GEIP ELG+LS+L +L L  N+L G IP  +G L K+
Sbjct:   31 LLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKV 192
The following BLAST results are available for this feature:
BLAST of FC873277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
Y4885_ARATH7.513e-1130.25Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1BB07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873277 ID=FC873277; Name=FC873277; organism=Citrus clementina; type=EST; length=766bp
TGAATAGCGTGAAGTTGGTCCTTGTTGCTATAATATTGGATTGCTTCGCT
TATTTGGCGCTGTCTGATTATCAAGGAGATGCACTATTTGCATTGAGGAC
TTCATTGCGTGTTCCAAACAATCAGCTAAGAGATTGGAATCAGAACCAAG
TTAATCCTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTT
GCCTCTGTAACATTGTCTTCCATGAACTTTTCTGGAACCTTGTCCCCAAG
AATAGGAGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCA
TAACTGGTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGC
TTGGACTTGGAAAATAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGG
CAATCTTAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTT
TAGTTTTAATCTATATGGTTTTTCTTCACTTTTTTCATGATCTGGCACAA
AAAGTCTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACA
ATTTTAGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTGATC
AGTATTCAGCTGGATTCGAATAATCTCAGTGGTCAAATTCCAGTGCATTT
GTTCCAAATTCCAAAATACAATTTCACGGGAAACAACTTGAACTGTGGTA
AAACTCTTCCACATTCTTGTGAATCTAGTACCAATGATTCAGGGAGTTCA
AAAAACCCAAGATTGG
back to top