FC873288

Overview
NameFC873288
Unique NameFC873288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  107 LSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 310
            + S  F+G LPP +G LR+L  L +  N ITG IPE L NL +LT+  ++ N L GKIP  +GN  +L
Sbjct:  166 MESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRL 233          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 2
Query:   50 PCTWSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKL 310
            PC+W  + C+N + V + +L +    G++P  +G L TL +L L  N   G +P    N   L  LDL +N + G+IP ++G+L  L
Sbjct:   54 PCSWRGISCNNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNL 140          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 2
Query:   50 PCT-WSNVICDNSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNL 301
            PCT W  + C N N +   +L  M  +GT+ P+ G +++L  + L  N +TG IP+EL  L +L +LD+ +N+L GK+P    N+
Sbjct:  350 PCTNWIGIACSNGN-ITVISLEKMELTGTISPEFGAIKSLQRIILGINNLTGMIPQELTTLPNLKTLDVSSNKLFGKVPGFRSNV 433          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: RCH2_ARATH (Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  107 LSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            LS  + +GT+P  + +LR L+ L L  N ++G IP+E+GN SSL  L L  NR+ G+IP  +G+LKK+ FL
Sbjct:  425 LSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFL 495          
BLAST of FC873288 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 2
Query:   50 PCTWSNVICD-NSNNVASETLSSMNFSGTLPPKIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 319
            PC W+ V CD  +  V +  L+     G LPP IG L  L  L L  N + G IP  LGN ++L  + L++N   G IP  +G+L  LQ L
Sbjct:   61 PCNWNGVTCDAKTKRVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKL 151          
The following BLAST results are available for this feature:
BLAST of FC873288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
Y5344_ARATH8.423e-1147.06Probable LRR receptor-like serine/threonine-protei... [more]
Y4372_ARATH8.423e-1134.48Probable LRR receptor-like serine/threonine-protei... [more]
TMK1_ARATH8.423e-1137.65Probable receptor protein kinase TMK1 OS=Arabidops... [more]
RCH2_ARATH8.423e-1146.48Receptor-like protein kinase 2 OS=Arabidopsis thal... [more]
FEI1_ARATH8.423e-1139.56LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873288 ID=FC873288; Name=FC873288; organism=Citrus clementina; type=EST; length=535bp
GCGTGTTCCAAACAATCAACAAAAAGATTGAAATCAAAACCAAGTTAATC
CTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTTGCCTCT
GAAACATTGTCTTCCATGAACTTTTCTGGAACCTTGCCCCCAAAAATAGG
AGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCATAACTG
GTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGCTTGGAC
TTGGAAAACAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGGCAATCT
TAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTTCACTTT
TAATCTATATGGTTTTTCTTCACCTTTTTTCATGATCTGGCACCAAAAGT
CTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACAATTTT
AGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTTGATCAGTA
TTCAGCTGGATTCAAATAATCTCAATGGTCAAATT
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