FC873375

Overview
NameFC873375
Unique NameFC873375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.054e-53
Identity = 95/206 (46.12%), Postives = 136/206 (66.02%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+  IWG+L+ A RVHG  ELAE  A ++  ++P++ G  VLLSN+YA   RW DVG+LR  M+++G+ K    S IE+ N+ + F   D  H + D+I+  L E+   +K AGYV      L D+E+EEK  ++ +HSE+LA+ YG++       IR++KNLRVCEDCHN IK ++++  R I++RD  RFHH+KDG CSC DYW
Sbjct:  576 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.347e-53
Identity = 93/207 (44.93%), Postives = 143/207 (69.08%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL-VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P  ++W  L+AAC  H  ++LAE  ++++ +LD  H G  V+LSN+YA++K+W+ V  LRK MK+R  +K   CS IE+NN V+EF + D     T +++  L+E++ ELK +GYVPD    +  ++ D+EK   + +HSEKLA+ +GL+++   + IR+VKNLRVC DCHN  KL+S ++ R++V+RD  RFHH++DG CSC D+W
Sbjct:  397 PTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.347e-53
Identity = 102/207 (49.28%), Postives = 138/207 (66.67%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP-AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P  ++W +L+ AC  HG IELAE   ++L +LDP++ G LVLLSN YA   +W+DV  +RKSM  + I K  A S +E+   +Y+F   ++      + +EKL E+I  LK  AGY P++ SAL D+E+EEK + +  HSEKLAL + L    K + IRIVKNLR+C DCH  +KL SKVY  EI++RDR RFH +KDG CSC+DYW
Sbjct:  437 PTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.004e-53
Identity = 98/208 (47.12%), Postives = 141/208 (67.79%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED--EEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            PN V+ GSL+ +C VHG++E+AE   ++L+Q+ P +    +L+SN+Y  + R      LR S+++RGI K    S I +N+ V+ F + DRSH +T +IY KLNEVI  ++ AGYVPD+   +   E   EEK + +  HSEKLA+C+GL+ +K  + + + KNLR+C DCH+ +K+VSKVY REI+IRDR RFH +K G CSC DYW
Sbjct:  416 PNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 4.004e-53
Identity = 91/206 (44.17%), Postives = 142/206 (68.93%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+  IWG+L++ACRVHG ++L +  ++ L +++P+H G  VLLSN+YA   +W+ V E+R     +G+ K    S +E++N+V  F T +++H   +++Y +L  + ++LK  GYVPD    L D+ED+EK  +++ HSE+LA+ + LI++   + IRI KNLRVC DCH+  K +SK+  REI++RD  RFHH+K+GVCSC DYW
Sbjct:  618 PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.830e-53
Identity = 95/202 (47.03%), Postives = 141/202 (69.80%), Query Frame = 1
Query:   13 IWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            ++ +L+AACRV G+ E  +  A +LL+L+P    A VLLSN+YA   +W ++   R  MK   + K+   S IE+ N+++ F+  DRS++QT+ IY K+ ++I ++K  GYVP+    LVD+E+EEK   + +HSEKLA+ +GL+S+   + IR++KNLRVC DCHN +K ++KVY REIV+RD  RFH +KDG+CSC DYW
Sbjct:  789 MYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.920e-53
Identity = 89/206 (43.20%), Postives = 144/206 (69.90%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P   +W +L+++C VH  +ELAE  A+++  +D ++ GA VL+ N+YA + RW+++ +LR  M+++G+ K+ ACS IEM N+ + F++ DRSH   D+I E L  V+ +++  GYV D    L D+++E KRE++  HSE+LA+ +G+I+++  + IR+ KN+R+C DCH  IK +SK+  REI++RD +RFHH+  G CSC DYW
Sbjct:  510 PTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.920e-53
Identity = 94/206 (45.63%), Postives = 137/206 (66.50%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P V +WG+L++AC+ H  +EL E+ A+QL  +DP + G  V LSN+YA  + W  V E+R  MKE+G+ K+  CS +E+   +  F   D+SH + ++I  ++  + S LK  G+V +  ++L DL DEE  E +  HSE++A+ YGLIS+ + + +RI KNLR C +CH   KL+SK+  REIV+RD  RFHH+KDGVCSC DYW
Sbjct:  489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.987e-52
Identity = 95/203 (46.80%), Postives = 139/203 (68.47%), Query Frame = 1
Query:   10 VIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            V+W S++ +C++HG+  L +  A+ L+ L+  + G  VLLSNIYA    ++ V ++R  MKE+GI+KE   S IE+ N+V+EF   DR H ++ +IY  L ++   +K  GYVP+ ++ L DLE+ EK + +  HSE+LA+ YGLIS+K  S ++I KNLRVC DCH   KL+SK+  R+IV+RDR RFHH+ DG CSC D+W
Sbjct:  430 VLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.595e-52
Identity = 92/206 (44.66%), Postives = 137/206 (66.50%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+  +W SL+ A R++  +EL    +K++L+L+  + GA VLLSNIYA    W +V  +R+SMK +G+ K+  CS +E+N EV+EF   D+SH +  QI     ++   L+ AGY  D    + D+++EEK + +  HSEK A+ +G++S K+D  IRIVKNLRVC DCH    ++SK++ REI++RDR RFHH+KDG CSC  +W
Sbjct:  407 PHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612          
The following BLAST results are available for this feature:
BLAST of FC873375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PP301_ARATH1.054e-5346.12Pentatricopeptide repeat-containing protein At4g02... [more]
PP145_ARATH2.347e-5344.93Pentatricopeptide repeat-containing protein At2g02... [more]
PP122_ARATH2.347e-5349.28Pentatricopeptide repeat-containing protein At1g74... [more]
PP386_ARATH4.004e-5347.12Pentatricopeptide repeat-containing protein At5g15... [more]
PP348_ARATH4.004e-5344.17Pentatricopeptide repeat-containing protein At4g33... [more]
PP347_ARATH6.830e-5347.03Pentatricopeptide repeat-containing protein At4g33... [more]
PP251_ARATH8.920e-5343.20Putative pentatricopeptide repeat-containing prote... [more]
PP224_ARATH8.920e-5345.63Pentatricopeptide repeat-containing protein At3g12... [more]
PP354_ARATH1.987e-5246.80Pentatricopeptide repeat-containing protein At4g37... [more]
PP410_ARATH2.595e-5244.66Putative pentatricopeptide repeat-containing prote... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1BH04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873375 ID=FC873375; Name=FC873375; organism=Citrus clementina; type=EST; length=700bp
CCAAATGTTGTCATTTGGGGATCACTGATGGCAGCTTGCCGGGTTCATGG
TGAGATTGAATTAGCTGAGTTTACTGCCAAACAGCTTCTCCAGCTAGATC
CAGATCACGATGGTGCTCTTGTGCTATTATCAAACATTTATGCAAAAGAC
AAAAGGTGGCAAGATGTTGGGGAGTTAAGGAAATCAATGAAGGAAAGAGG
TATACTTAAAGAGAGAGCATGCAGTAGAATAGAAATGAACAATGAAGTGT
ACGAGTTTCTGACAGCAGATAGAAGTCATAAACAAACAGATCAGATCTAT
GAGAAGCTAAATGAGGTGATTAGTGAGTTGAAGCCGGCTGGCTATGTTCC
TGATATCCATAGTGCTCTGGTTGATTTAGAGGATGAAGAAAAGAGGGAAG
TGATTCTATGGCACAGTGAGAAGTTGGCACTTTGTTATGGGCTGATCAGT
TCCAAAAAAGATTCATGCATTCGCATAGTAAAGAATCTCAGGGTTTGTGA
GGACTGCCATAACTTTATAAAACTGGTTTCCAAGGTTTATGCGAGGGAGA
TTGTCATCCGAGATAGAACCAGGTTTCACCATTACAAAGATGGTGTGTGT
TCTTGCAAAGATTATTGGTGACCTTTTTTAAACAAATTGGAACTCATGTC
ATAACTGTGAAACATGTAAACATTCACTAAGCAAAAAAAAAAAAAAAAAA
back to top