FC873375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.056e-45 Identity = 86/206 (41.75%), Postives = 128/206 (62.14%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+ + W +L++ACR G +E+ ++ A+ L++LDP H LLS+IYA +W V +LR+ M+E+ + KE S I+ +++ F D S DQIY KL E+ +++ GY PD D+E+ K +++ +HSE+LA+ +GLI IR+ KNLRVC DCHN K +S V REI++RD RFH +KDG CSC D+W Sbjct: 538 PDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 4.013e-45 Identity = 89/206 (43.20%), Postives = 130/206 (63.11%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+VVIW SL+++ R + EL E + L + G VLLSNIY+ K+W+ ++R+ M + GI K + S +E ++ F D SH +T IY+ L +I + K G+V D L+D+ +EEK E + +HSEKLAL Y ++ S + IRI KN+R+C DCHN+IK VSK+ R I++RDR RFH ++DG+CSC+DYW Sbjct: 332 PDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAK---SGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.525e-44 Identity = 85/202 (42.08%), Postives = 126/202 (62.38%), Query Frame = 1 Query: 13 IWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 +W +++ AC++H +L AK+L+ L+PD+ G V+LSNIYA + +V +R M + K+ S IE+ N+ Y F D SH++T +IY L +IS K GY P + +E+EEK + +HSEKLA+ +GL+ + D I IVKNLR+CEDCH+ K +S V R+I +RD+ RFHH+++G CSC DYW Sbjct: 383 LWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 3.756e-43 Identity = 82/207 (39.61%), Postives = 128/207 (61.84%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+ +WG+L+ ACRV+ + +L A++L +L+P V+LSNIY+ W+D +R MK++G+++ CS IE N++++F+ D SH ++++I +KL E+ ++K GY L D+ ++ K E+I HSEK+A+ +GL+ I I KNLR+C DCH K +S + R I+IRD RFHH+ DG CSC DYW Sbjct: 402 PSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 3.756e-43 Identity = 80/206 (38.83%), Postives = 130/206 (63.11%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+ +WG+L+ AC++H +++AE ++++ +P++ G VL+SNIY+ K + + +R M+ER K+ S +E V+ FL DRSH+QT++++ L+E+ + + D EE HSE+LA+ +G+++S + I ++KNLRVCEDCH F+K VSK+ R+ V+RD +RFH++KDGVCSCKDYW Sbjct: 424 PDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRG------EEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.093e-42 Identity = 88/211 (41.71%), Postives = 131/211 (62.09%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE-----DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P V W +L+ ACR H + LAE A +L+ + P V+L+N+YA ++W+++ +RKSM+ + I K+ CS IE+ + + F+ D SH ++ E L E++ ++K GYV D A+V + DEE R + HSEKLA+ +GL+S++ + +VKNLR+C DCHN IK +S V REI++RD RFH +KDG CSC DYW Sbjct: 513 PGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMR--LGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.864e-42 Identity = 87/213 (40.85%), Postives = 131/213 (61.50%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQL-DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV-ILWHSEKLALCYGLISSKKDS-----CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+ V+W +L+ +CR HG L + A +L +L +P + + + +SNIY + + + K M+ + KE S E+ N+V+EF + R + +Y +L +IS LK GYVP++ SA D+EDEE+ E +L HSEKLAL + ++ +K S I+I+KN R+C DCHNF+KL SK+ +EI++RD RFHH+KD CSC DYW Sbjct: 533 PDAVVWIALLGSCRKHGNTRLGKLAADKLKELVEPTNSMSYIQMSNIYNAEGSFNEANLSIKEMETWRVRKEPDLSWTEIGNKVHEFASGGRHRPDKEAVYRELKRLISWLKEMGYVPEMRSASQDIEDEEQEEDNLLHHSEKLALAFAVMEGRKSSDCGVNLIQIMKNTRICIDCHNFMKLASKLLGKEILMRDSNRFHHFKDSSCSCNDYW 745
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.435e-42 Identity = 85/207 (41.06%), Postives = 130/207 (62.80%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD-SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+V+IW ++++A E A +A+++L+++P + VL+SN+YA K+W +V +RKSMKE G+ KE S IE +V+ F H I L + + AGYVPD ++ L+D++DEEK + + HSE+LAL YGL+ + I I+KNLR+C DCH+ +K++S + R++VIRD RFHH+ GVCSC D+W Sbjct: 616 PSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.180e-42 Identity = 85/209 (40.67%), Postives = 126/209 (60.29%), Query Frame = 1 Query: 10 VIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY------VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 ++WG+L++A R+HG +E+ +K+L+Q + A + LSN YA W+D LR MK G +KERACS IE + VY F D S ++ +I L ++ +K G+ + S VD+++E K E++ H E+LAL YGL+ S IRI+ NLR+C DCH KL+S++ REIV+RD RFH +K+G C+C+DYW Sbjct: 408 LLWGALLSAGRLHGRVEIVSEASKRLIQSNQQVTSAYIALSNAYAVSGGWEDSESLRLEMKRSGNVKERACSWIENKDSVYVFHAGDLSCDESGEIERFLKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDYW 616
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 7.084e-42 Identity = 88/208 (42.31%), Postives = 130/208 (62.50%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC--SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P++ W +L AC+ H AE ++ LL+LDP+ G+ + L +A QDV + R S+++R +KER+ S IE++ ++ +F D SHK T +I KL+E+IS GY P ++ D+E+EEK V HSEKLAL G + + + IRI+KNLR+C DCH+ +K VSK+ R+I++RD +FHH+KDG CSC DYW Sbjct: 460 PDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKR--IKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665 The following BLAST results are available for this feature:
BLAST of FC873375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 146
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873375 ID=FC873375; Name=FC873375; organism=Citrus clementina; type=EST; length=700bpback to top |