FC873375

Overview
NameFC873375
Unique NameFC873375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.056e-45
Identity = 86/206 (41.75%), Postives = 128/206 (62.14%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+ + W +L++ACR  G +E+ ++ A+ L++LDP H     LLS+IYA   +W  V +LR+ M+E+ + KE   S I+   +++ F   D S    DQIY KL E+ +++   GY PD      D+E+  K +++ +HSE+LA+ +GLI       IR+ KNLRVC DCHN  K +S V  REI++RD  RFH +KDG CSC D+W
Sbjct:  538 PDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.013e-45
Identity = 89/206 (43.20%), Postives = 130/206 (63.11%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+VVIW SL+++ R +   EL E   + L +      G  VLLSNIY+  K+W+   ++R+ M + GI K +  S +E    ++ F   D SH +T  IY+ L  +I + K  G+V D    L+D+ +EEK E + +HSEKLAL Y ++ S   + IRI KN+R+C DCHN+IK VSK+  R I++RDR RFH ++DG+CSC+DYW
Sbjct:  332 PDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAK---SGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.525e-44
Identity = 85/202 (42.08%), Postives = 126/202 (62.38%), Query Frame = 1
Query:   13 IWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            +W +++ AC++H   +L    AK+L+ L+PD+ G  V+LSNIYA   +  +V  +R  M    + K+   S IE+ N+ Y F   D SH++T +IY  L  +IS  K  GY P     +  +E+EEK   + +HSEKLA+ +GL+ +  D  I IVKNLR+CEDCH+  K +S V  R+I +RD+ RFHH+++G CSC DYW
Sbjct:  383 LWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.756e-43
Identity = 82/207 (39.61%), Postives = 128/207 (61.84%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+  +WG+L+ ACRV+ + +L    A++L +L+P      V+LSNIY+    W+D   +R  MK++G+++   CS IE  N++++F+  D SH ++++I +KL E+  ++K   GY       L D+ ++ K E+I  HSEK+A+ +GL+       I I KNLR+C DCH   K +S +  R I+IRD  RFHH+ DG CSC DYW
Sbjct:  402 PSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.756e-43
Identity = 80/206 (38.83%), Postives = 130/206 (63.11%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+  +WG+L+ AC++H  +++AE    ++++ +P++ G  VL+SNIY+  K  + +  +R  M+ER   K+   S +E    V+ FL  DRSH+QT++++  L+E+ + +       D          EE       HSE+LA+ +G+++S   + I ++KNLRVCEDCH F+K VSK+  R+ V+RD +RFH++KDGVCSCKDYW
Sbjct:  424 PDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRG------EEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.093e-42
Identity = 88/211 (41.71%), Postives = 131/211 (62.09%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE-----DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P  V W +L+ ACR H  + LAE  A +L+ + P      V+L+N+YA  ++W+++  +RKSM+ + I K+  CS IE+  + + F+  D SH    ++ E L E++ ++K  GYV D   A+V  +     DEE R  +  HSEKLA+ +GL+S++    + +VKNLR+C DCHN IK +S V  REI++RD  RFH +KDG CSC DYW
Sbjct:  513 PGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMR--LGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.864e-42
Identity = 87/213 (40.85%), Postives = 131/213 (61.50%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQL-DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV-ILWHSEKLALCYGLISSKKDS-----CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+ V+W +L+ +CR HG   L +  A +L +L +P +  + + +SNIY  +  + +     K M+   + KE   S  E+ N+V+EF +  R     + +Y +L  +IS LK  GYVP++ SA  D+EDEE+ E  +L HSEKLAL + ++  +K S      I+I+KN R+C DCHNF+KL SK+  +EI++RD  RFHH+KD  CSC DYW
Sbjct:  533 PDAVVWIALLGSCRKHGNTRLGKLAADKLKELVEPTNSMSYIQMSNIYNAEGSFNEANLSIKEMETWRVRKEPDLSWTEIGNKVHEFASGGRHRPDKEAVYRELKRLISWLKEMGYVPEMRSASQDIEDEEQEEDNLLHHSEKLALAFAVMEGRKSSDCGVNLIQIMKNTRICIDCHNFMKLASKLLGKEILMRDSNRFHHFKDSSCSCNDYW 745          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.435e-42
Identity = 85/207 (41.06%), Postives = 130/207 (62.80%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD-SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+V+IW ++++A       E A  +A+++L+++P  +   VL+SN+YA  K+W +V  +RKSMKE G+ KE   S IE   +V+ F      H     I   L  +  +   AGYVPD ++ L+D++DEEK + +  HSE+LAL YGL+      + I I+KNLR+C DCH+ +K++S +  R++VIRD  RFHH+  GVCSC D+W
Sbjct:  616 PSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.180e-42
Identity = 85/209 (40.67%), Postives = 126/209 (60.29%), Query Frame = 1
Query:   10 VIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY------VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            ++WG+L++A R+HG +E+    +K+L+Q +     A + LSN YA    W+D   LR  MK  G +KERACS IE  + VY F   D S  ++ +I   L ++   +K  G+      +    S  VD+++E K E++  H E+LAL YGL+     S IRI+ NLR+C DCH   KL+S++  REIV+RD  RFH +K+G C+C+DYW
Sbjct:  408 LLWGALLSAGRLHGRVEIVSEASKRLIQSNQQVTSAYIALSNAYAVSGGWEDSESLRLEMKRSGNVKERACSWIENKDSVYVFHAGDLSCDESGEIERFLKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDYW 616          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.084e-42
Identity = 88/208 (42.31%), Postives = 130/208 (62.50%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC--SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P++  W +L  AC+ H     AE  ++ LL+LDP+  G+ + L   +A     QDV + R S+++R  +KER+   S IE++ ++ +F   D SHK T +I  KL+E+IS     GY P    ++ D+E+EEK  V   HSEKLAL  G + +   + IRI+KNLR+C DCH+ +K VSK+  R+I++RD  +FHH+KDG CSC DYW
Sbjct:  460 PDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKR--IKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665          
The following BLAST results are available for this feature:
BLAST of FC873375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PP108_ARATH1.056e-4541.75Putative pentatricopeptide repeat-containing prote... [more]
PP428_ARATH4.013e-4543.20Pentatricopeptide repeat-containing protein At5g50... [more]
PP182_ARATH1.525e-4442.08Pentatricopeptide repeat-containing protein At2g33... [more]
PP411_ARATH3.756e-4339.61Pentatricopeptide repeat-containing protein At5g40... [more]
PP223_ARATH3.756e-4338.83Putative pentatricopeptide repeat-containing prote... [more]
PP274_ARATH1.093e-4241.71Pentatricopeptide repeat-containing protein At3g49... [more]
PP114_ARATH1.864e-4240.85Pentatricopeptide repeat-containing protein At1g71... [more]
PP377_ARATH2.435e-4241.06Putative pentatricopeptide repeat-containing prote... [more]
PP313_ARATH3.180e-4240.67Pentatricopeptide repeat-containing protein At4g15... [more]
PPR10_ARATH7.084e-4242.31Pentatricopeptide repeat-containing protein At1g04... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873375 ID=FC873375; Name=FC873375; organism=Citrus clementina; type=EST; length=700bp
CCAAATGTTGTCATTTGGGGATCACTGATGGCAGCTTGCCGGGTTCATGG
TGAGATTGAATTAGCTGAGTTTACTGCCAAACAGCTTCTCCAGCTAGATC
CAGATCACGATGGTGCTCTTGTGCTATTATCAAACATTTATGCAAAAGAC
AAAAGGTGGCAAGATGTTGGGGAGTTAAGGAAATCAATGAAGGAAAGAGG
TATACTTAAAGAGAGAGCATGCAGTAGAATAGAAATGAACAATGAAGTGT
ACGAGTTTCTGACAGCAGATAGAAGTCATAAACAAACAGATCAGATCTAT
GAGAAGCTAAATGAGGTGATTAGTGAGTTGAAGCCGGCTGGCTATGTTCC
TGATATCCATAGTGCTCTGGTTGATTTAGAGGATGAAGAAAAGAGGGAAG
TGATTCTATGGCACAGTGAGAAGTTGGCACTTTGTTATGGGCTGATCAGT
TCCAAAAAAGATTCATGCATTCGCATAGTAAAGAATCTCAGGGTTTGTGA
GGACTGCCATAACTTTATAAAACTGGTTTCCAAGGTTTATGCGAGGGAGA
TTGTCATCCGAGATAGAACCAGGTTTCACCATTACAAAGATGGTGTGTGT
TCTTGCAAAGATTATTGGTGACCTTTTTTAAACAAATTGGAACTCATGTC
ATAACTGTGAAACATGTAAACATTCACTAAGCAAAAAAAAAAAAAAAAAA
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