FC873377

Overview
NameFC873377
Unique NameFC873377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.604e-35
Identity = 80/185 (43.24%), Postives = 119/185 (64.32%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEA-DEDQEDGDERWD--------------PDSDMDVDDERKSLPN--RVKREAVEPEQKDREGLKGMAEQARGFDMIAD 504
            +F+++FN+PLL+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q    DS   ++ +ED++D D+R                 DS+ + +  RK++ N  +VKR   E E+K+ E  K + E+ +  D   D
Sbjct:  286 EFIKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAVAEDSIHDDSGEEDEDDPDKRISIRSSDKRIACDEEFSDSEDEGEGGRKNVANFKKVKRVKTE-EEKEGEDKKDVKEEEKAKDEKTD 469          
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.095e-35
Identity = 80/193 (41.45%), Postives = 120/193 (62.18%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEA-DEDQEDGDERWDPDSDMDVDDERKSLPNRV---KREAVEPEQKDREGLKGMAEQARGFDMIADDSISTKVLDMSSMPIDEPSIK 567
            +F++ +N+P L++GGGGYTIRNV+RCW YET VAL VE+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+N+L E L  L HAP VQ Q  P D+   E+ DED+ D D+R  P SD D    ++ +P        +  E  ++D    KG  ++ R    +  D+ S K    +S  I +   K
Sbjct:  284 EFVKKYNLPFLMVGGGGYTIRNVSRCWTYETSVALAVEIANELPYNDYFEYFGPDFKLHISPSNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIPEDAINDESDDEDKVDKDDRL-PQSDKD----KRIVPENEYSDSEDEGEGGRRDNRSYKGQRKRPR----LDKDTNSNKASSETSSEIKDEKEK 467          
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 70/148 (47.30%), Postives = 99/148 (66.89%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDER---WDPD---------SDMDVDDERKSLPN 408
            +F++SFNVPL++LGGGGYTI+NVARCW YET + +  E+ D++P ++Y EY+GP+Y LH+ P+NMEN+N++  LE+++ +LLE L  L HAP+    + PPDS     DED ED D R    D D         SD D +D R++  N
Sbjct:  281 EFLKSFNVPLVVLGGGGYTIKNVARCWTYETSILVDSELKDELPYNDYLEYYGPEYRLHITPNNMENQNTKDYLEKLKIQLLENLRNLNHAPAAAHHDIPPDSFNYSDDEDDEDPDVRISEADRDKKVHHQGELSDSDEEDGRRNYSN 428          
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDAC1_STRPU (Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.802e-34
Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDER 393
            +FM+ +N+PLLL+GGGGYTIRNVARCW YET  ALGVE+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + L++I+ +L E +  + HAP VQ Q  P D+ +P+ D D ED  E  D    +   D+R
Sbjct:  285 EFMKQYNLPLLLMGGGGYTIRNVARCWTYETSTALGVEIANELPYNDYFEYFGPDFKLHISPSNMTNQNTGEYLDKIKTRLYENMRMIPHAPGVQMQPIPEDA-IPD-DSDAEDEAENPDKRISIMAQDKR 413          
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDAC2_HUMAN (Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.150e-33
Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 1
Query:    7 MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDERKSLPNRVKREAVEPEQKDREGLKGMAEQARG 486
            +++FN+PLL+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + +E+I+ +L E L  L HAP VQ Q  P D+     D   EDG+   DPD  + +    K +      E  + E +   G + +A+  +G
Sbjct:  289 VKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDA--VHEDSGDEDGE---DPDKRISIRASDKRI--ACDEEFSDSEDEGEGGRRNVADHKKG 441          
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDAC2_CHICK (Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.150e-33
Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 1
Query:    7 MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDERKSLPNRVKREAVEPEQKDREGLKGMAEQARG 486
            +++FN+PLL+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + +E+I+ +L E L  L HAP VQ Q  P D+     D   EDG+   DPD  + +    K +      E  + E +   G + +A+  +G
Sbjct:  289 VKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDA--VHEDSGDEDGE---DPDKRISIRASDKRI--ACDEEFSDSEDEGEGGRRNVADHKKG 441          
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDAC2_MOUSE (Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.501e-33
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = 1
Query:   10 RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDERKSLPNRVKREAVEPEQKDREGLKGMAEQARG 486
            ++FN+PLL+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + +E+I+ +L E L  L HAP VQ Q  P D+     D   EDG+   DPD  + +    K +      E  + E +   G + +A+  +G
Sbjct:  290 KTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDA--VHEDSGDEDGE---DPDKRISIRASDKRI--ACDEEFSDSEDEGEGGRRNVADHKKG 441          
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDA7_ARATH (Histone deacetylase 7 OS=Arabidopsis thaliana GN=HDA7 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.340e-31
Identity = 62/121 (51.24%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDP 363
            +++RSFNVPL++LGGGGYT+ NVARCWCYET +A+G ++D+ +P ++Y +YF PDY LH+ P+N +N N+R  +  +R  LL  LS + HAPSV FQ+ P  S+  EA E   D ++R DP
Sbjct:  289 QYVRSFNVPLMILGGGGYTLPNVARCWCYETAIAVGEQLDNDLPGNDYMKYFRPDYKLHILPTNRQNLNTRLDIITMRETLLAQLSLVMHAPSVPFQDTPSSSQATEAAE--VDMEKRNDP 407          
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDA9_ARATH (Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.974e-31
Identity = 61/133 (45.86%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDP---DSDMDVDDE 390
            KF++ FN+PLL+ GGGGYT  NVARCW  ETG+ L  E+ +++P+++Y +YF PD++L +   ++EN N++  +  I+ ++LE L  +QHAPSVQ QE PPD  +P+ DED+++ D R D    D  +  DDE
Sbjct:  283 KFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRADQRSRDKQIQRDDE 415          
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDA17_ARATH (Histone deacetylase 17 OS=Arabidopsis thaliana GN=HDA17 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.904e-30
Identity = 60/133 (45.11%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDP---DSDMDVDDE 390
            KF++ FN+PLL+ GGGGYT  NVARCW  ETG+ L  E+ +++ +++Y +YF PD++L +   ++EN N++  +  I+ ++LE L  +QHAPSVQ QE PPD  +P+ DED+++ D R D    D  +  DDE
Sbjct:   15 KFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEISENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQRSRDKQIQRDDE 147          
The following BLAST results are available for this feature:
BLAST of FC873377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HDA1A_XENLA1.604e-3543.24Probable histone deacetylase 1-A OS=Xenopus laevis... [more]
HDAC1_DROME2.095e-3541.45Histone deacetylase Rpd3 OS=Drosophila melanogaste... [more]
HDA11_DICDI6.739e-3447.30Type-1 histone deacetylase 1 OS=Dictyostelium disc... [more]
HDAC1_STRPU8.802e-3450.38Histone deacetylase 1 OS=Strongylocentrotus purpur... [more]
HDAC2_HUMAN1.150e-3343.75Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=... [more]
HDAC2_CHICK1.150e-3343.75Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE... [more]
HDAC2_MOUSE1.501e-3344.03Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=... [more]
HDA7_ARATH5.340e-3151.24Histone deacetylase 7 OS=Arabidopsis thaliana GN=H... [more]
HDA9_ARATH6.974e-3145.86Histone deacetylase 9 OS=Arabidopsis thaliana GN=H... [more]
HDA17_ARATH5.904e-3045.11Histone deacetylase 17 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873377 ID=FC873377; Name=FC873377; organism=Citrus clementina; type=EST; length=795bp
AAATTTATGAGATCATTCAATGTGCCTCTGTTGCTGCTGGGTGGTGGTGG
TTACACTATTCGGAATGTTGCTCGTTGCTGGTGCTACGAGACAGGAGTTG
CACTTGGAGTAGAGGTTGATGACAAGATGCCACAGCATGAGTATTATGAG
TATTTTGGTCCTGACTATACTCTTCATGTTGCTCCCAGTAACATGGAGAA
TAAGAATTCGCGCCAGTTGCTTGAGGAAATAAGGAATAAGCTTCTCGAAT
ATCTCTCAAAGCTTCAACATGCACCCAGTGTCCAGTTTCAGGAAAGACCA
CCTGATTCTGAACTTCCAGAGGCGGATGAAGATCAGGAGGATGGCGATGA
GAGATGGGATCCAGATTCTGACATGGATGTTGATGATGAACGAAAGTCCC
TACCAAACAGAGTTAAGAGAGAAGCAGTTGAACCTGAGCAAAAAGATCGG
GAGGGCCTTAAAGGAATGGCCGAGCAAGCTAGAGGCTTCGACATGATTGC
AGACGATTCTATAAGCACAAAGGTTTTAGATATGAGTTCAATGCCAATTG
ATGAACCGAGCATCAAAGTTGAACAAGAAAACATGAGCAAGGCATCTGAT
CACATGTACCCGCATTCGTAACTAAACTTTATCTCAGCATCGACATCTGC
TATACGAATTATGTGTTTTAGACATGAAAACCTGATTGGTTGTTCCAAAC
ATCGCTTTCCAAGTTATATTTCTCCCATCAGTCTAATGTATTGAAGTATA
AAACTTCTGTCTTAGCAAAATGTCAAACTTATTTTCTTTGATATT
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