FC873377

Overview
NameFC873377
Unique NameFC873377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDAC8_MOUSE (Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.039e-14
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRN 237
            K++  + +  L+LGGGGY + N ARCW Y TGV LG  +  ++P HE++  +GPDY L + PS   ++N    +++I N
Sbjct:  289 KYVLQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILN 367
[Close]
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDAC8_HUMAN (Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.039e-14
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRN 237
            K++  + +  L+LGGGGY + N ARCW Y TGV LG  +  ++P HE++  +GPDY L + PS   ++N    +++I N
Sbjct:  289 KYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILN 367
[Close]
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDAC8_BOVIN (Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.662e-14
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRN 237
            K++  + +  L+LGGGGY + N ARCW Y TGV LG  +  ++P HE++  +GPDY L + PS   ++N    +++I N
Sbjct:  289 KYILQWELATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRVQQILN 367
[Close]
BLAST of FC873377 vs. ExPASy Swiss-Prot
Match: HDAC8_XENLA (Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.541e-14
Identity = 32/88 (36.36%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKL 264
            K++  + +P L+LGGGGY + N ARCW Y T + +G  +  ++P HE++  +GPDY L + PS   ++N  Q ++EI   +   L ++
Sbjct:  237 KYVLQWQLPTLILGGGGYHLPNTARCWTYLTALIVGRTLSSEIPDHEFFTEYGPDYVLEITPSCRPDRNDTQKVQEILQSIKGNLKRV 324
The following BLAST results are available for this feature:
BLAST of FC873377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HDAC8_MOUSE2.039e-1440.51Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=... [more]
HDAC8_HUMAN2.039e-1440.51Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=... [more]
HDAC8_BOVIN2.662e-1440.51Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 ... [more]
HDAC8_XENLA4.541e-1436.36Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873377 ID=FC873377; Name=FC873377; organism=Citrus clementina; type=EST; length=795bp
AAATTTATGAGATCATTCAATGTGCCTCTGTTGCTGCTGGGTGGTGGTGG
TTACACTATTCGGAATGTTGCTCGTTGCTGGTGCTACGAGACAGGAGTTG
CACTTGGAGTAGAGGTTGATGACAAGATGCCACAGCATGAGTATTATGAG
TATTTTGGTCCTGACTATACTCTTCATGTTGCTCCCAGTAACATGGAGAA
TAAGAATTCGCGCCAGTTGCTTGAGGAAATAAGGAATAAGCTTCTCGAAT
ATCTCTCAAAGCTTCAACATGCACCCAGTGTCCAGTTTCAGGAAAGACCA
CCTGATTCTGAACTTCCAGAGGCGGATGAAGATCAGGAGGATGGCGATGA
GAGATGGGATCCAGATTCTGACATGGATGTTGATGATGAACGAAAGTCCC
TACCAAACAGAGTTAAGAGAGAAGCAGTTGAACCTGAGCAAAAAGATCGG
GAGGGCCTTAAAGGAATGGCCGAGCAAGCTAGAGGCTTCGACATGATTGC
AGACGATTCTATAAGCACAAAGGTTTTAGATATGAGTTCAATGCCAATTG
ATGAACCGAGCATCAAAGTTGAACAAGAAAACATGAGCAAGGCATCTGAT
CACATGTACCCGCATTCGTAACTAAACTTTATCTCAGCATCGACATCTGC
TATACGAATTATGTGTTTTAGACATGAAAACCTGATTGGTTGTTCCAAAC
ATCGCTTTCCAAGTTATATTTCTCCCATCAGTCTAATGTATTGAAGTATA
AAACTTCTGTCTTAGCAAAATGTCAAACTTATTTTCTTTGATATT
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