FC873410

Overview
NameFC873410
Unique NameFC873410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL3_ARATH (Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29
Identity = 95/249 (38.15%), Postives = 127/249 (51.00%), Query Frame = 3
Query:   15 LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLG-VVSDTSYGCSYFL--NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAA 731
            LPGG+G +V+        LA+ + I     V  I     GVKVT  G + +  D V+  VPLGVLK  +IKF P LP  K   I  LG G+ NK+ M F  VFW  +++  G +  D +Y   +FL  +     G  +L+ + AG+ A   E M    A       L+ I      +   P+Q + + WG D  SLGSYS   VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF TGL  A
Sbjct:  376 LPGGNGRLVQA-------LAENVPILYEKTVQTIRYGSNGVKVTA-GNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGALLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREA 616          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.118e-29
Identity = 88/248 (35.48%), Postives = 126/248 (50.81%), Query Frame = 3
Query:   15 LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLG-VVSDTSYGCSYFL--NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAA 731
            +PGG+   VR        LA G+ I  G  V +I     G  V  +  +TF  D V+  VPLGVLK   I+F P LP  K  AI+ LG G+ NK+++ F   FW   ++  G +  D+     +FL  +    +G  +L+ + AG+ A + EK S           L+KI      +   P+Q + + WGTD  + GSYSY  +G S D Y+ L   V D +FFAGEAT+  YP ++HGA  +G   A
Sbjct:  470 IPGGNSRFVRA-------LADGIPIFYGQNVRRIQYGCDGAMVYTDK-QTFRGDMVLCTVPLGVLKKGNIQFVPELPAQKREAIERLGFGLLNKVVLLFPYDFWDGRIDTFGHLTEDSGQRGEFFLFYSYSSVSGGPLLIALVAGESAIEFEKTSPAENVEKVLETLRKIFSPKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSSGDDYDILAESVCDRVFFAGEATNRRYPATMHGALLSGYREA 709          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL1_ARATH (Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.154e-27
Identity = 97/262 (37.02%), Postives = 131/262 (50.00%), Query Frame = 3
Query:   15 LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLG-VVSDTSYGCSYFL--NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 761
            +PGG+ + V       + LA+ L I  G  V  I     GV V   G K F  D  +  VPLGVLK  +I+F P LP  K+ AI  LG G+ NK+ M F   FW   ++  G +  D S    +FL  +    +G  +LV + AG  A   E +S   +       L+ I       +PD   P+Q L S WG D  S GSYSY  VG S D Y+ L   V +  +FFAGEAT+  YP ++HGAF +G+  A +  +RV  R
Sbjct:  460 IPGGNEIFV-------HALAENLPIFYGSTVESIRYGSNGVLVYT-GNKEFHCDMALCTVPLGVLKKGSIEFYPELPHKKKEAIQRLGFGLLNKVAMLFPCNFWGEEIDTFGRLTEDPSTRGEFFLFYSYSSVSGGPLLVALVAGDAAERFETLSPTDSVKRVLQILRGIYHPKGIVVPD---PVQALCSRWGQDKFSYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREAANI-LRVARR 709          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: KDM1B_HUMAN (Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.926e-24
Identity = 79/248 (31.85%), Postives = 124/248 (50.00%), Query Frame = 3
Query:   21 GGHGLMVRGYLPVINTLAKGLDIRL-GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMAA 731
            G H L+  GY  +I  LA+GLDI+L   +V  I      V+VT   G  + A  V+V VPL +L+   I+F P L + K  AI+ LG GI  KI + F   FW +     +F G V  S +  G  + F ++     H VL+ + AG+    +  + D+         L+++    +   P +Y V+ W TD     +YS+   G S + Y+ +   +   +FFAGEAT+  +P +V GA+ +G+  A
Sbjct:  570 GDHTLLTPGYSVIIEKLAEGLDIQLKSPQVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREA 817          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO_MAIZE (Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 79/252 (31.35%), Postives = 121/252 (48.02%), Query Frame = 3
Query:   48 YLPVINTLAKGLDIRLGHRVTKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE---DCRMRVLERY 764
            YL   +   K +D RL  ++ K+ R       GV V  E    + AD V+V+  LGVL++  I+F+P+LP WK  AI    + +  KI + F + FWP  +    FL   S   Y   +     +     VL+     + +R IE+ SDE         L+K+ P  D       LV  W +D    G++S   VG +   Y++L  PV  ++F GE TS  Y G VHGA+ +G+ +AE   +C  + + +Y
Sbjct:  244 YLKTDDKSGKIVDPRL--QLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKY 493          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: KDM1B_MOUSE (Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1B PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.247e-22
Identity = 75/245 (30.61%), Postives = 117/245 (47.76%), Query Frame = 3
Query:   21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN----VEFLGVVSDTSYGCSYFLNLHKA-TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMAA 731
            G H L+  GY  +I  LA+GLDIRL   V  I      V+VT   G    A  V+V VPL +L+   I+F P L + K  AI+ LG GI  KI + F   FW +     +F G V  ++     F   +   +   VL+ +  G+    +  M D+         L+++  +     P +Y V+ W T+     +YS+     S + Y+ +   +   +FFAGEAT+  +P +V GA+ +G+  A
Sbjct:  576 GDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVTTTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASQRGLFAVFYDMDSQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATNRHFPQTVTGAYLSGVREA 820          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: AMX1_CAEEL (Amine oxidase family member 1 OS=Caenorhabditis elegans GN=amx-1 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 8.009e-21
Identity = 85/259 (32.82%), Postives = 124/259 (47.88%), Query Frame = 3
Query:   21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKIT--RHYIGVKVTVEGGKTFVA--DAVVVAVPLGVLKARTIK-FEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-------EFLGVVSDTSYGCSYFLNLHKATGH-------CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA-SSPIQYLVSHWGTDANSLGSYSYDTVGKSHD-LYERLXIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMAA 731
            G H ++  G   +I+ LA GLDIRL   V  I   R    VK+  E  +      D VV+   L VLK+   K F P LP  K+ AIDDLG G+  KI + FD+ FW  V       E+ G VSD     S F   +  +G         VL+     +    +  +++   A+     L+K+ P A  +P+ +++SHWG D     SY++   G   D  Y +L   +D  L+FAGE T  + P ++ GA+ +GL  A
Sbjct:  551 GEHAVITDGAQRIIDFLATGLDIRLNCPVKCIDWGRDDRKVKIFFENAEQAAEEFDKVVITTSLSVLKSNHSKMFVPPLPIEKQKAIDDLGAGLIEKIAVKFDRRFWDTVDADGLRTEYFGKVSDCKTDRSLFNIFYDFSGKDPNGEDTFVLMSYVTAEHVNLVNVLTESEVADKFCATLRKMFPSAVINPLGHMMSHWGADRFVGMSYTFVPFGSDGDATYNQLKKSIDEKLYFAGEHTIAAEPQTMAGAYISGLREA 809          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO5_ARATH (Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20
Identity = 89/309 (28.80%), Postives = 138/309 (44.66%), Query Frame = 3
Query:    9 ELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA----RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSY----------GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQL-----KKILPDASSPI---------------QYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNL--------------------FFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 764
            ++ PG    + +GYL VI+ LA  L    I+L  +VTKI      VK+    G    AD V+V V LGVLKA        F P LPD+K  AI  LG G+ NK+ +   +  +P+++ +    D+ +            +    +H  +   VL+   AG+ A ++EK++DE   +   T +     K++  D + P+               + L S WG+D    GSYSY  VG S D  + +  P+  +                     FAGEAT  ++  + HGA+ +GL  A     R+L+ Y
Sbjct:  227 QMFPGEEITIAKGYLSVIHHLASVLPQGVIQLNRKVTKIEWQSNEVKLHFSDGSVVFADHVIVTVSLGVLKAGIETDAELFSPPLPDFKSDAIRRLGYGVVNKLFVEMSQRKFPSLQLVFDREDSEFRFVKIPWWMRRTATITPIH--SNSKVLLSWFAGKEALELEKLTDEEIKDAVMTTISCLTGKEVKNDTAKPLTNGSLNDDDEAMKITKVLKSKWGSDPLFRGSYSYVAVGSSGDDLDAMAEPLPKINKKVGQVNGHDQAKVHELQVMFAGEATHRTHYSTTHGAYYSGLREAN----RLLKHY 529          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO1_ARATH (Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.395e-19
Identity = 62/218 (28.44%), Postives = 104/218 (47.71%), Query Frame = 3
Query:   87 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW---PNVEFLGVVSDTSYGCSYFLNLHKA-TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSP--IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNLFFAGEATSMSYPGSVHGAFSTGL 722
            ++L   V ++ +   GV V  E G  + A+ V+V+  +GVL++  + F+P LP WK  AI    V +  KI + F + FW   P  EF     +     +++ ++  A  G  +LV     + ++ +E  SD+     A + L+ +   A+ P     LV  W  +    GSYS   +   + L + +  PV  +FF GE TS  + G VHG +  G+
Sbjct:  207 LKLNQVVREVQQSRNGVVVKTEDGSVYEANYVIVSASIGVLQSDLLSFQPLLPRWKTEAIQKCDVMVYTKIFLKFPQCFWPCGPGQEFFIYAHEQRGYFTFWQHMENAYPGSNILVVTLTNEQSKRVEAQSDQETMKEAMSVLRDMF-GATIPYATDILVPRWWNNRFQRGSYSNYPMISDNQLLQNIKAPVGRIFFTGEHTSEKFSGYVHGGYLAGI 423          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: SMOX_MOUSE (Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.411e-17
Identity = 97/325 (29.85%), Postives = 137/325 (42.15%), Query Frame = 3
Query:   15 LPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKI-----TRHYIGVKV-----------TVEGGKT--------------------------FVADAVVVAVPLGVLKAR-TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVV-SDTSYGCSYF----LNLHKATGHCVLVYMP-----------AGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVD----------NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 764
            +PG H ++  G++ V+  LA+G+    I+LG  V  I     + H  G ++           T EGG++                            AD V+V V LGVLK + T  F P LP  K AAI  LG+G  +KI + F++ FW P    L  V  D +  C+      L   K  G  VL Y P            G+ A  +E+  DEA A      L++    P+   P + L S WG++    GSYSY  VG S    E+L  P+            + F+GEAT   Y  + HGA  +G   A     R++E Y
Sbjct:  228 IPGAHHIIPSGFMRVVELLAEGIPPHVIQLGKPVRCIHWDQASAHPRGPEIEPRGEGDHNHDTGEGGQSGENPQQGRWDEDEPWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFRPCLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESCTLTYPPELWYRKICGFDVL-YPPERYGHVLSGWICGEEALVMERCDDEAVAEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREA----ARLIEMY 547          
The following BLAST results are available for this feature:
BLAST of FC873410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
LDL3_ARATH3.587e-2938.15Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL1_ORYSJ6.118e-2935.48Lysine-specific histone demethylase 1 homolog 1 OS... [more]
LDL1_ARATH1.154e-2737.02Lysine-specific histone demethylase 1 homolog 1 OS... [more]
KDM1B_HUMAN5.926e-2431.85Lysine-specific histone demethylase 1B OS=Homo sap... [more]
PAO_MAIZE3.252e-2231.35Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1[more]
KDM1B_MOUSE4.247e-2230.61Lysine-specific histone demethylase 1B OS=Mus musc... [more]
AMX1_CAEEL8.009e-2132.82Amine oxidase family member 1 OS=Caenorhabditis el... [more]
PAO5_ARATH1.784e-2028.80Probable polyamine oxidase 5 OS=Arabidopsis thalia... [more]
PAO1_ARATH4.395e-1928.44Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO... [more]
SMOX_MOUSE2.411e-1729.85Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AH02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873410 ID=FC873410; Name=FC873410; organism=Citrus clementina; type=EST; length=765bp
TACAGGAAGAGCTGCTTCCTGGGGGTCATGGGCTTATGGTTCGGGGTTAC
CTACCGGTTATAAACACCCTTGCCAAAGGTCTTGACATTCGCTTAGGCCA
CAGGGTTACTAAAATAACAAGGCATTATATTGGAGTGAAGGTAACAGTAG
AAGGTGGAAAGACATTTGTTGCAGATGCTGTTGTTGTTGCTGTTCCTCTT
GGTGTGTTGAAGGCGAGAACCATCAAGTTTGAACCTAGGCTCCCTGACTG
GAAGGAAGCAGCCATTGATGACCTTGGTGTGGGCATTGAGAATAAAATAA
TAATGCATTTCGACAAAGTGTTTTGGCCAAATGTGGAGTTCTTGGGGGTG
GTTTCAGATACATCATATGGGTGCAGCTACTTTCTAAATCTTCACAAGGC
AACAGGTCACTGTGTCCTTGTTTACATGCCTGCCGGGCAGTTGGCTAGAG
ACATTGAGAAAATGTCCGATGAAGCTGCTGCTAATTTTGCTTTTACGCAA
CTCAAGAAGATCCTTCCTGATGCATCTTCCCCGATCCAATATCTTGTTTC
TCATTGGGGCACAGACGCCAACTCGCTTGGGTCCTACAGCTACGATACAG
TAGGCAAATCCCATGATCTGTATGAAAGGCTAANGATACCAGTGGACAAC
CTATTCTTTGCCGGCGAGGCAACAAGCATGAGCTACCCAGGGTCTGTTCA
TGGTGCATTCTCGACTGGACTGATGGCTGCCGAGGACTGCCGTATGCGTG
TTCTGGAGCGTTATG
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