FC873410
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL3_ARATH (Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29 Identity = 95/249 (38.15%), Postives = 127/249 (51.00%), Query Frame = 3 Query: 15 LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLG-VVSDTSYGCSYFL--NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAA 731 LPGG+G +V+ LA+ + I V I GVKVT G + + D V+ VPLGVLK +IKF P LP K I LG G+ NK+ M F VFW +++ G + D +Y +FL + G +L+ + AG+ A E M A L+ I + P+Q + + WG D SLGSYS VG S D Y+ L V + LFFAGEAT+ YP ++HGAF TGL A Sbjct: 376 LPGGNGRLVQA-------LAENVPILYEKTVQTIRYGSNGVKVTA-GNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGALLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREA 616
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.118e-29 Identity = 88/248 (35.48%), Postives = 126/248 (50.81%), Query Frame = 3 Query: 15 LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLG-VVSDTSYGCSYFL--NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAA 731 +PGG+ VR LA G+ I G V +I G V + +TF D V+ VPLGVLK I+F P LP K AI+ LG G+ NK+++ F FW ++ G + D+ +FL + +G +L+ + AG+ A + EK S L+KI + P+Q + + WGTD + GSYSY +G S D Y+ L V D +FFAGEAT+ YP ++HGA +G A Sbjct: 470 IPGGNSRFVRA-------LADGIPIFYGQNVRRIQYGCDGAMVYTDK-QTFRGDMVLCTVPLGVLKKGNIQFVPELPAQKREAIERLGFGLLNKVVLLFPYDFWDGRIDTFGHLTEDSGQRGEFFLFYSYSSVSGGPLLIALVAGESAIEFEKTSPAENVEKVLETLRKIFSPKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSSGDDYDILAESVCDRVFFAGEATNRRYPATMHGALLSGYREA 709
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL1_ARATH (Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.154e-27 Identity = 97/262 (37.02%), Postives = 131/262 (50.00%), Query Frame = 3 Query: 15 LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLG-VVSDTSYGCSYFL--NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 761 +PGG+ + V + LA+ L I G V I GV V G K F D + VPLGVLK +I+F P LP K+ AI LG G+ NK+ M F FW ++ G + D S +FL + +G +LV + AG A E +S + L+ I +PD P+Q L S WG D S GSYSY VG S D Y+ L V + +FFAGEAT+ YP ++HGAF +G+ A + +RV R Sbjct: 460 IPGGNEIFV-------HALAENLPIFYGSTVESIRYGSNGVLVYT-GNKEFHCDMALCTVPLGVLKKGSIEFYPELPHKKKEAIQRLGFGLLNKVAMLFPCNFWGEEIDTFGRLTEDPSTRGEFFLFYSYSSVSGGPLLVALVAGDAAERFETLSPTDSVKRVLQILRGIYHPKGIVVPD---PVQALCSRWGQDKFSYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREAANI-LRVARR 709
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: KDM1B_HUMAN (Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 5.926e-24 Identity = 79/248 (31.85%), Postives = 124/248 (50.00%), Query Frame = 3 Query: 21 GGHGLMVRGYLPVINTLAKGLDIRL-GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMAA 731 G H L+ GY +I LA+GLDI+L +V I V+VT G + A V+V VPL +L+ I+F P L + K AI+ LG GI KI + F FW + +F G V S + G + F ++ H VL+ + AG+ + + D+ L+++ + P +Y V+ W TD +YS+ G S + Y+ + + +FFAGEAT+ +P +V GA+ +G+ A Sbjct: 570 GDHTLLTPGYSVIIEKLAEGLDIQLKSPQVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREA 817
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO_MAIZE (Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22 Identity = 79/252 (31.35%), Postives = 121/252 (48.02%), Query Frame = 3 Query: 48 YLPVINTLAKGLDIRLGHRVTKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE---DCRMRVLERY 764 YL + K +D RL ++ K+ R GV V E + AD V+V+ LGVL++ I+F+P+LP WK AI + + KI + F + FWP + FL S Y + + VL+ + +R IE+ SDE L+K+ P D LV W +D G++S VG + Y++L PV ++F GE TS Y G VHGA+ +G+ +AE +C + + +Y Sbjct: 244 YLKTDDKSGKIVDPRL--QLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKY 493
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: KDM1B_MOUSE (Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1B PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.247e-22 Identity = 75/245 (30.61%), Postives = 117/245 (47.76%), Query Frame = 3 Query: 21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPN----VEFLGVVSDTSYGCSYFLNLHKA-TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMAA 731 G H L+ GY +I LA+GLDIRL V I V+VT G A V+V VPL +L+ I+F P L + K AI+ LG GI KI + F FW + +F G V ++ F + + VL+ + G+ + M D+ L+++ + P +Y V+ W T+ +YS+ S + Y+ + + +FFAGEAT+ +P +V GA+ +G+ A Sbjct: 576 GDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVTTTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASQRGLFAVFYDMDSQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATNRHFPQTVTGAYLSGVREA 820
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: AMX1_CAEEL (Amine oxidase family member 1 OS=Caenorhabditis elegans GN=amx-1 PE=2 SV=3) HSP 1 Score: 100.908 bits (250), Expect = 8.009e-21 Identity = 85/259 (32.82%), Postives = 124/259 (47.88%), Query Frame = 3 Query: 21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKIT--RHYIGVKVTVEGGKTFVA--DAVVVAVPLGVLKARTIK-FEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-------EFLGVVSDTSYGCSYFLNLHKATGH-------CVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA-SSPIQYLVSHWGTDANSLGSYSYDTVGKSHD-LYERLXIPVD-NLFFAGEATSMSYPGSVHGAFSTGLMAA 731 G H ++ G +I+ LA GLDIRL V I R VK+ E + D VV+ L VLK+ K F P LP K+ AIDDLG G+ KI + FD+ FW V E+ G VSD S F + +G VL+ + + +++ A+ L+K+ P A +P+ +++SHWG D SY++ G D Y +L +D L+FAGE T + P ++ GA+ +GL A Sbjct: 551 GEHAVITDGAQRIIDFLATGLDIRLNCPVKCIDWGRDDRKVKIFFENAEQAAEEFDKVVITTSLSVLKSNHSKMFVPPLPIEKQKAIDDLGAGLIEKIAVKFDRRFWDTVDADGLRTEYFGKVSDCKTDRSLFNIFYDFSGKDPNGEDTFVLMSYVTAEHVNLVNVLTESEVADKFCATLRKMFPSAVINPLGHMMSHWGADRFVGMSYTFVPFGSDGDATYNQLKKSIDEKLYFAGEHTIAAEPQTMAGAYISGLREA 809
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO5_ARATH (Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20 Identity = 89/309 (28.80%), Postives = 138/309 (44.66%), Query Frame = 3 Query: 9 ELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKA----RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSY----------GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQL-----KKILPDASSPI---------------QYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNL--------------------FFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 764 ++ PG + +GYL VI+ LA L I+L +VTKI VK+ G AD V+V V LGVLKA F P LPD+K AI LG G+ NK+ + + +P+++ + D+ + + +H + VL+ AG+ A ++EK++DE + T + K++ D + P+ + L S WG+D GSYSY VG S D + + P+ + FAGEAT ++ + HGA+ +GL A R+L+ Y Sbjct: 227 QMFPGEEITIAKGYLSVIHHLASVLPQGVIQLNRKVTKIEWQSNEVKLHFSDGSVVFADHVIVTVSLGVLKAGIETDAELFSPPLPDFKSDAIRRLGYGVVNKLFVEMSQRKFPSLQLVFDREDSEFRFVKIPWWMRRTATITPIH--SNSKVLLSWFAGKEALELEKLTDEEIKDAVMTTISCLTGKEVKNDTAKPLTNGSLNDDDEAMKITKVLKSKWGSDPLFRGSYSYVAVGSSGDDLDAMAEPLPKINKKVGQVNGHDQAKVHELQVMFAGEATHRTHYSTTHGAYYSGLREAN----RLLKHY 529
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO1_ARATH (Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO1 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.395e-19 Identity = 62/218 (28.44%), Postives = 104/218 (47.71%), Query Frame = 3 Query: 87 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW---PNVEFLGVVSDTSYGCSYFLNLHKA-TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSP--IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNLFFAGEATSMSYPGSVHGAFSTGL 722 ++L V ++ + GV V E G + A+ V+V+ +GVL++ + F+P LP WK AI V + KI + F + FW P EF + +++ ++ A G +LV + ++ +E SD+ A + L+ + A+ P LV W + GSYS + + L + + PV +FF GE TS + G VHG + G+ Sbjct: 207 LKLNQVVREVQQSRNGVVVKTEDGSVYEANYVIVSASIGVLQSDLLSFQPLLPRWKTEAIQKCDVMVYTKIFLKFPQCFWPCGPGQEFFIYAHEQRGYFTFWQHMENAYPGSNILVVTLTNEQSKRVEAQSDQETMKEAMSVLRDMF-GATIPYATDILVPRWWNNRFQRGSYSNYPMISDNQLLQNIKAPVGRIFFTGEHTSEKFSGYVHGGYLAGI 423
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: SMOX_MOUSE (Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.411e-17 Identity = 97/325 (29.85%), Postives = 137/325 (42.15%), Query Frame = 3 Query: 15 LPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKI-----TRHYIGVKV-----------TVEGGKT--------------------------FVADAVVVAVPLGVLKAR-TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVV-SDTSYGCSYF----LNLHKATGHCVLVYMP-----------AGQLARDIEKMSDEAAANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVD----------NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 764 +PG H ++ G++ V+ LA+G+ I+LG V I + H G ++ T EGG++ AD V+V V LGVLK + T F P LP K AAI LG+G +KI + F++ FW P L V D + C+ L K G VL Y P G+ A +E+ DEA A L++ P+ P + L S WG++ GSYSY VG S E+L P+ + F+GEAT Y + HGA +G A R++E Y Sbjct: 228 IPGAHHIIPSGFMRVVELLAEGIPPHVIQLGKPVRCIHWDQASAHPRGPEIEPRGEGDHNHDTGEGGQSGENPQQGRWDEDEPWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFRPCLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESCTLTYPPELWYRKICGFDVL-YPPERYGHVLSGWICGEEALVMERCDDEAVAEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREA----ARLIEMY 547 The following BLAST results are available for this feature:
BLAST of FC873410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873410 ID=FC873410; Name=FC873410; organism=Citrus clementina; type=EST; length=765bpback to top |