FC873460

Overview
NameFC873460
Unique NameFC873460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_THISH (Chaperone protein dnaJ OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 71/214 (33.18%), Postives = 102/214 (47.66%), Query Frame = 1
Query:   49 LIMQYHPDINKSPG---AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGV-DPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M++HPD N  PG   +EEKFKE   AYE+L+D +KR+ YD+FG AG+     G +       D FE                 +                D++Y+L L+ EE++FG +  I V     C  C G+GA+     ++C  C G G V   Q    G  S   TC +C G GK+I   C+ C G G V+  +++ V +P GV +G
Sbjct:   28 LAMKHHPDRN--PGDKESEEKFKEAKEAYEILTDPQKRAAYDQFGHAGVDPSAGGGARGGASFSDIFE-------------DIFGDIFGGGRGGGSRVYRGSDLQYNLELTLEEAVFGTEVKIRVPSLVECGECHGSGAEKGTTPETCGTCGGVGQVRMQQ----GFFSVQQTCPRCHGTGKMITHPCKACHGQGRVEEHKTLSVKVPAGVDSG 222          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_SILPO (Chaperone protein dnaJ OS=Silicibacter pomeroyi GN=dnaJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 73/212 (34.43%), Postives = 97/212 (45.75%), Query Frame = 1
Query:   58 QYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            + HPD NK +P AE  FKE++ AYEVL D EK++ YDRFG A   G   G      G    +  SA                              D+RY+L ++ EE+  G Q+ I V     C SC GTGA+      +C  C G G V    R   G  +   TC  C G G+II + C+ C G G V+  R++ V IP GV  G  ++
Sbjct:   31 ELHPDRNKDNPDAESLFKEVNEAYEVLKDAEKKAAYDRFGHAAFEGGMGGGQRPGGGFGSGDFSSAFSDVFEDLFGDFMGGQRGGGGRRAARGS--DLRYNLRVTLEEAFSGLQKTINVPTAVACSSCEGTGAEGGVEPTTCPTCSGMGKV----RAQQGFFTVERTCPTCSGLGQIIKNPCKSCRGQGRVEKDRALSVNIPAGVETGTRIR 236          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_SERP5 (Chaperone protein dnaJ OS=Serratia proteamaculans (strain 568) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 67/211 (31.75%), Postives = 100/211 (47.39%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT-GEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M++HPD N+   AE +FKEI  AYE+L+D +KR+ YD++G A    G   G      G +  +++                +               D+RY++ LS EE++ G  + I +   E C  C G+GAK  +   +C  C G+G V   Q    G  +    C  C G G+II D C  C G+G V+  +++ V IP GV  G
Sbjct:   28 LAMKFHPDRNQEQDAEARFKEIKEAYEILTDAQKRAAYDQYGHAAFEQGGMGGGGGFGGGAEFSDIFGDVFGDIFGGGRRQRASRGS------------DLRYNMELSLEEAVRGVTKEIRIPTLEECGVCHGSGAKPGSSPVTCPTCHGQGQVQMRQ----GFFTVQQACPHCHGRGQIIKDPCNSCHGHGRVEKAKTLSVKIPAGVDTG 222          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_RHITR (Chaperone protein dnaJ (Fragment) OS=Rhizobium tropici GN=dnaJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 74/215 (34.42%), Postives = 97/215 (45.12%), Query Frame = 1
Query:   49 LIMQYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L MQ+HPD N     AE KFKEI+ AYE L D +KR+ YDR+G A    E+ G+     G                                       D+RY++ +S EE+  G    I V    TCD C G+GAK     ++C  C G G V   Q    G  S   TC  C G G+II D C +C G G V  +RS+ V IP G+ +G  ++
Sbjct:    6 LAMQFHPDKNPDDSNAERKFKEINEAYETLKDPQKRAAYDRYGHAAF--EHGGMGGGG-GFGAGFGGGGFSDIFEDIFGEMMGGGRARGRSSGGRERGADLRYNMEISLEEAFSGKTAQIRVPTSITCDVCSGSGAKPGTQPKTCGTCQGSGRVRAAQ----GFFSVERTCPTCHGRGQIIPDPCTKCHGQGRVTEERSLSVNIPAGIEDGTRIR 213          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_RHIME (Chaperone protein dnaJ OS=Rhizobium meliloti GN=dnaJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 75/217 (34.56%), Postives = 96/217 (44.24%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEK-FKEISSAYEVLSDDEKRSVYDRFGEAGIT--GEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L M+YHPD N      EK FKEI+ AYE L D +KR+ YDR+G A     G   G  N   G        A                              D+RY++ +S EE+  G    I V    TCD C GTGAK     ++C  C G G V   Q    G  S   TC  CGG G+ I D C +C G G V  +R++ V IP G+ +G  ++
Sbjct:   27 LAMKYHPDRNPGDQESEKSFKEINEAYETLKDPQKRAAYDRYGHAAFEQGGMGAGFGNGFAGG------GAHGFSDIFEDIFGEMMGGRQRRSSGGRERGADLRYNMEISLEEAYSGKTAQIRVPTSITCDVCTGTGAKPGTSPKTCGTCQGTGRVRAAQ----GFFSIERTCPTCGGRGQTIADPCTKCHGQGRVVEERTLSVNIPAGIEDGTRIR 233          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_METPP (Chaperone protein dnaJ OS=Methylibium petroleiphilum (strain PM1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 69/214 (32.24%), Postives = 101/214 (47.20%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGA---EEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXX-EAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M++HPD N+  GA   EE FKE   AYE+LSD +KR+ YD++G AG+     G     +G    E Y                +                D+ Y + ++ EE+  G    I +  +++C +C GTGAK     ++C  C G G V   Q    G  S   TC  C G GKII + C  C G G ++S ++++V IP G++ G
Sbjct:   28 LAMKHHPDRNQGDGAKKAEESFKEAKEAYEMLSDAQKRAAYDQYGHAGVDPNMGG-----RGAGGPEAYGGFAEAFGDIFGDIFGQNGQRRGPGGQQVYRGNDLSYAMEITLEEAARGKDTQIRIPSWDSCSTCDGTGAKPGTSAKTCPTCSGSGQVHLRQ----GFFSIQQTCPSCHGTGKIIPEPCTACNGAGRIKSNKTLEVKIPAGINEG 232          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_HAMD5 (Chaperone protein dnaJ OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI--TGEYDGLSNTSQGVDPF-ELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSN 675
            L  +YHPD NK   AE KFKE+  AYEVLSD +KR+ YD+ G      +G   G  N+S   + F +++S                               D+RY L+L+ EE++ G  + I ++    C+ C G+GAK      +C  C G G V   Q    G  +   TC +C G G++I D CR+C G G+V+  ++  V +P G+ +
Sbjct:   28 LAKKYHPDRNKDKDAETKFKEMKEAYEVLSDQQKRAAYDQHGHTAFEQSGMGGGFHNSSNFSNVFNDVFSDFFGGHQQRTQRGR-----------------DLRYTLNLTLEEAVRGASKEIHITTLVHCEHCKGSGAKQGTRPVTCTTCRGVGEVHMQQ----GFFTIQQTCPRCHGQGQMIKDPCRQCRGQGKVEEPKTFSVKVPAGIDS 218          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_HAES2 (Chaperone protein dnaJ OS=Haemophilus somnus (strain 2336) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 74/216 (34.26%), Postives = 107/216 (49.54%), Query Frame = 1
Query:   49 LIMQYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEA-----GITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M+YHPD  K    +EEKFKEI+ AYEVL+D EKR++YD++G A     G  G + G S    G D  +++                                D+RYD+ +S EE++   ++ I+++    C +C G+GA++ + I+SC  C G G V + Q   F +  Q  TC  C G GK I   C  C G G V   +++ V IP GV  G
Sbjct:   28 LAMKYHPDRTKGDKESEEKFKEINEAYEVLADKEKRAMYDQYGHAAFEQGGGAGGFGGFS----GADFGDIFGDMFGDIFGGGRSRQRVVRGE-----------DLRYDIEISLEEAVKSCKKDIQINTLVHCGTCHGSGAEAGSKIESCPTCHGAGRVRRQQ--SFFVTEQ--TCPHCHGTGKKIEKPCHTCHGEGRVHKTQNLTVTIPMGVDTG 224          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_ERWCT (Chaperone protein dnaJ OS=Erwinia carotovora subsp. atroseptica GN=dnaJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 73/215 (33.95%), Postives = 99/215 (46.05%), Query Frame = 1
Query:   49 LIMQYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEA----GITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M+YHPD N     AE KFKEI  AYE+L D +KR+ YD++G A    G  G   G      G D  +++                +               D+RY++ LS EE++ G  + I +   E CD C G GAK  +   +C  C G G V   Q    G  +    C  C G GKII D C +C G+G V+  +++ V IP GV  G
Sbjct:   28 LAMKYHPDRNPGDSEAEAKFKEIKEAYEILIDSQKRAAYDQYGHAAFEQGGMGGGGGGGFGGGGADFGDIFGDVFGDIFGGGRRQRASRGS------------DLRYNMELSLEEAVRGVTKEIRIPALEECDVCHGNGAKPGSSPITCPTCHGNGQVQMRQ----GFFTVQQACPHCHGRGKIIKDPCIKCHGHGRVEKSKTLSVKIPAGVDTG 226          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_BURCM (Chaperone protein dnaJ OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 70/211 (33.18%), Postives = 101/211 (47.87%), Query Frame = 1
Query:   49 LIMQYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M+YHPD N  S  AEE FKE   AYE+LSD +KR+ YD++G AG+     G     QG   F    A                              D+RY + ++ E++  G    I V  + +C+ C G+GAK     ++C  C G+G V  +Q    G  S   TC KC G G  I + C  C G+G+V+  ++++V IP G+ +G
Sbjct:   28 LAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNMGGAGG--QGFGGFA--DAFGDIFGDIFGQAAGGAARGGRGGPQVYRGADLRYSMEITLEQAAHGYDTQIRVPSWVSCEVCHGSGAKPGTKPETCPTCHGQGTVRMSQ----GFFSIQQTCPKCHGTGTYIPEPCVHCHGSGKVKETKTLEVKIPAGIDDG 230          
The following BLAST results are available for this feature:
BLAST of FC873460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_THISH1.546e-2533.18Chaperone protein dnaJ OS=Thioalkalivibrio sp. (st... [more]
DNAJ_SILPO1.546e-2534.43Chaperone protein dnaJ OS=Silicibacter pomeroyi GN... [more]
DNAJ_SERP51.546e-2531.75Chaperone protein dnaJ OS=Serratia proteamaculans ... [more]
DNAJ_RHITR1.546e-2534.42Chaperone protein dnaJ (Fragment) OS=Rhizobium tro... [more]
DNAJ_RHIME1.546e-2534.56Chaperone protein dnaJ OS=Rhizobium meliloti GN=dn... [more]
DNAJ_METPP1.546e-2532.24Chaperone protein dnaJ OS=Methylibium petroleiphil... [more]
DNAJ_HAMD51.546e-2532.55Chaperone protein dnaJ OS=Hamiltonella defensa sub... [more]
DNAJ_HAES21.546e-2534.26Chaperone protein dnaJ OS=Haemophilus somnus (stra... [more]
DNAJ_ERWCT1.546e-2533.95Chaperone protein dnaJ OS=Erwinia carotovora subsp... [more]
DNAJ_BURCM1.546e-2533.18Chaperone protein dnaJ OS=Burkholderia ambifaria (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BA03FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873460 ID=FC873460; Name=FC873460; organism=Citrus clementina; type=EST; length=691bp
TAACGGCACCAGCTATAATCTTTTTGATTTTGTTAATGTCTTCTTGTTTT
GATTATGCAGTATCATCCGGATATCAACAAGAGTCCTGGAGCTGAAGAGA
AGTTCAAAGAGATAAGTTCTGCGTATGAGGTCCTTTCAGATGATGAGAAA
AGATCTGTATATGATCGCTTTGGTGAGGCAGGTATAACTGGAGAATATGA
TGGATTGAGCAACACTTCACAGGGGGTGGATCCTTTTGAATTATATAGTG
CATTCTTTGGTGGTTCAGATGGGCTCTTTGGAGGAGTGGGTGAGGCCGGA
GGCATTAACTTCAATTTTGGAAACAAAGGAAATTTTGGTCTTGACATTCG
GTATGACCTGCATTTGAGCTTTGAAGAATCAATTTTTGGAGGACAGCGTG
GGATTGAAGTTTCTTGTTTTGAAACATGTGATAGTTGTGGTGGAACTGGT
GCCAAATCTAGTAATTGCATACAATCATGTAAAGCTTGTTGGGGTAGAGG
AGGAGTACTGAAAACTCAGAGAACACCATTTGGATTAATCTCACAGGTAT
CTACATGCTCTAAGTGTGGTGGTGATGGTAAGATAATAATTGATCATTGC
CGAAGATGTGGTGGTAATGGTGAAGTACAGTCAAAAAGAAGTATGAAAGT
GGTTATCCCACCTGGTGTTAGTAACGGAGCCACCATGCAAA
back to top