FC873460

Overview
NameFC873460
Unique NameFC873460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLP8 (Chaperone protein dnaJ OS=Chlorobaculum parvum (strain NCIB 8327) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 72/232 (31.03%), Postives = 109/232 (46.98%), Query Frame = 1
Query:   49 LIMQYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGV-------------DPFELYSAXXXXXXXXXXXXXE--------AXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L ++YHPD N  +  AEEKFKE + AYEVLS+D+KR  YD+FG AG+     G S  S G              D FE+++                       +               D++  L L+ EE   G ++ +++     C  C GTG+KS    ++C+ C G G V +  +T FG    +  C  CGG+G+++ D C  C G G  Q + ++K+ +P GV +G
Sbjct:   27 LALKYHPDKNPDNKEAEEKFKEANEAYEVLSNDDKRRRYDQFGHAGV-----GSSAASGGGPGGFGGGGYADINDIFEMFTGGGRARGGGSPFSGFEDIFGGGFSGGGGRRARSTGIHGTDLKIRLKLTLEEIAKGVEKTLKIKKQVVCSECNGTGSKSGKT-ETCQTCHGSGEVRQASKTMFGQFVNIVACPTCGGEGQVVKDRCTSCYGEGIKQGEVTVKINVPAGVQDG 252          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_CAMHC (Chaperone protein dnaJ OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 66/211 (31.28%), Postives = 103/211 (48.82%), Query Frame = 1
Query:   49 LIMQYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L ++YHPD N     AEEKFKEI+ AY+VL +DE+R  YDR+G+ G+ G +          D F+ +               +A              LD    + +SF+++ FG  + I+    + C +C GTG+K    + +C  C G G ++K      G +S   TC  C G G+I+ + C  C G G ++ + ++K  IP GV+ G
Sbjct:   26 LALKYHPDRNAGDKEAEEKFKEINEAYQVLGNDERRQTYDRYGKEGLNGAFGNDFGGFDFGDIFDTFFGGGGFNKSRSQRYDDA------------YDLDSEILVSISFKDAFFGVSKDIKYKIKKPCKTCDGTGSKDKK-LNTCPYCGGSGKIVKRS----GFLSFAQTCPFCKGSGQIVKEKCHDCAGKGFIEEQVNVKFDIPKGVNTG 219          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_BRAJA (Chaperone protein dnaJ OS=Bradyrhizobium japonicum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 74/222 (33.33%), Postives = 103/222 (46.40%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEE-KFKEISSAYEVLSDDEKRSVYDRFGEAGIT------GEYDGLSNTSQGVDPFE-LYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L M++HPD N      E KFKEI+ AYEVL D +KR+ YDRFG A         G   G    S   D FE L+                                D+RY++ ++ EE+  G    IE+    TC++C G GAK+    ++C  C G G V ++Q    G  +   TC  C G G++I D C  C G G V  +R++ V IP GV +G  ++
Sbjct:   31 LAMKFHPDRNPGDDTSEVKFKEINEAYEVLKDKDKRAAYDRFGHAAFEQGGPGGGAGFGAGFASSFSDIFEDLFGMAGQRGRGGRERGA-----------------DLRYNMEITLEEAFGGKTAQIEIPVSVTCEACSGIGAKAGTKPKTCSTCGGAGRVRQSQ----GFFTLERTCPGCQGRGQMIEDACPSCSGQGRVTRERTLSVNIPQGVEDGTRIR 231          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNJA3_MOUSE (DnaJ homolog subfamily A member 3, mitochondrial OS=Mus musculus GN=Dnaja3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 72/222 (32.43%), Postives = 106/222 (47.75%), Query Frame = 1
Query:   49 LIMQYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQG-------VDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L  +YHPD NK  P A+EKF +++ AYEVLSD+ KR  YD +G AG      G S++ QG       VDP EL+               +                   Y + L+F ++  G  +   V+  +TC+ C G G +    +Q C  C G G  ++T  T  G     STC +CGG G II + C  C G G+ + K+ + + +P GV +G T++
Sbjct:  116 LAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSAGFD---PGTSSSGQGYWRGGPSVDPEELFRKIFGEFSSSPFGDFQNVFDQPQ-----------EYIMELTFNQAAKGVNKEFTVNIMDTCERCDGKGNEPGTKVQHCHYCGGSG--METINT--GPFVMRSTCRRCGGRGSIITNPCVVCRGAGQAKQKKRVTIPVPAGVEDGQTVR 319          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNJA3_HUMAN (DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 70/219 (31.96%), Postives = 103/219 (47.03%), Query Frame = 1
Query:   49 LIMQYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNT----SQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L  +YHPD NK  P A+EKF +++ AYEVLSD+ KR  YD +G AG      G  ++       VDP EL+               +                   Y + L+F ++  G  +   V+  +TC+ C G G +    +Q C  C G G  ++T  T  G     STC +CGG G III  C  C G G+ + K+ + + +P GV +G T++
Sbjct:  116 LAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSAGFDPGASGSQHSYWKGGPTVDPEELFRKIFGEFSSSSFGDFQTVFDQPQ-----------EYFMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINT--GPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRVMIPVPAGVEDGQTVR 319          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_RICRO (Chaperone protein dnaJ OS=Rickettsia rickettsii (strain Iowa) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 64/216 (29.63%), Postives = 101/216 (46.76%), Query Frame = 1
Query:   43 LVLIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L L  QYHPD   +  AE+KFK I++AY+VL D++KR+ YDR G      +       + G    ++                 +               D++Y+L ++ EE+  G ++ I  S    CD+C G+G++    + +C AC G G     Q    G  +    C KC G+G II + C++C G G    +R++ V IP GV NG  ++
Sbjct:   25 LKLAKQYHPDTTDAKDAEKKFKAINAAYDVLKDEQKRAAYDRLGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSSRPTSAKVRGS----DLKYNLTINLEEAFHGIEKNINFSSAVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ----GFFTIEQACHKCQGNGHIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIR 232          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_RICPU (Chaperone protein dnaJ OS=Rickettsia peacockii (strain Rustic) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 64/216 (29.63%), Postives = 101/216 (46.76%), Query Frame = 1
Query:   43 LVLIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L L  QYHPD   +  AE+KFKEI++AY+VL D++ R+ YDR G      +       + G    ++                 +               D++Y+L ++ EE+  G ++ I  S    CD+C G+G++    + +C AC G G     Q    G  +    C KC G+G II + C++C G G    +R++ V IP GV NG  ++
Sbjct:   25 LKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQTRAAYDRLGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSSRPTSAKVRGS----DLKYNLTINLEEAFHGIEKNISFSSTVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ----GFFTIEQACHKCQGNGHIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIR 232          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEFS (Chaperone protein dnaJ OS=Pseudomonas fluorescens (strain SBW25) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 70/211 (33.18%), Postives = 95/211 (45.02%), Query Frame = 1
Query:   49 LIMQYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M++HPD N  S  +EE FKE + AYE LSD  KR+ YD++G AG+     G      G +  +++                                D+RY L L+ EE++ G    I V     C  C G+GAK  +   +C  C G G V   Q    G  S   TC +C G GKII D C  C G G V+  +++ V +P GV  G
Sbjct:   28 LAMKHHPDRNPDSKESEEMFKEANEAYECLSDPNKRAAYDQYGHAGVDPSMGGGGAGFGGQNFSDIFGDVFSDFFGGGRGGQRGGAQRGS---------DLRYTLELNLEEAVRGTSVNIRVPTLVNCKPCDGSGAKKGSSPITCPTCGGIGQVRMQQ----GFFSVQQTCPRCHGQGKIISDPCDSCHGEGRVEEYKTLSVKVPAGVDTG 225          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_ORITB (Chaperone protein dnaJ OS=Orientia tsutsugamushi (strain Boryong) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 66/219 (30.14%), Postives = 106/219 (48.40%), Query Frame = 1
Query:   49 LIMQYHPDINKSP-GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT----GEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L+++YHPD N     AE+K K I+ AY++L D++KRS YD+ G         G Y      + G+DP +++                A               +++YD+ L+ EE+ +G  + I      TCD+C G G+  +N   SC  C G  GV ++Q+   G     +TC  C G G +I + C +C G G   + R+++V IP GV  G+ ++
Sbjct:   28 LVLKYHPDHNPGDKNAEQKIKNINEAYDILKDEKKRSAYDQLGHQAFKNSGGGNYQQHHGFTGGIDPNDIFENIFGDFMGARRSSKTAFSKKAGA--------NLKYDISLTLEEAFYGVTKIISFKTALTCDACAGKGSLDNNSTSSCPTCRG-SGVTRSQQ---GFFFFENTCQTCRGAGHVIKNPCTKCYGEGRYINTRNLEVKIPAGVKEGSRIK 234          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_HALME (Chaperone protein dnaJ OS=Halobacterium mediterranei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 66/222 (29.73%), Postives = 98/222 (44.14%), Query Frame = 1
Query:   58 QYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE----------AGITGEYDGLSNT-SQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            +YHPD++    AEEKFK++  A EVL+DDEKR +YD+ G           AG  G   G  N    G +PF                                   D+   + +  E++  G +R + +   E C  C G G  +   + +C  C G G     Q+TPFG + Q +TC  CGG+GK   + C  C G+G V+  R + + IP G  +G  ++
Sbjct:   30 KYHPDVSDEEDAEEKFKKVQKAKEVLTDDEKRQMYDQLGHERFQQAQKRGAGGGGGGRGQGNPFGGGGNPFGGMGGGGFEDIFNNLFNGGGGQRRSRPQQGR----DVAQRITIDLEDAYHGVERDVTIRRREVCPECDGEGHPADADVNTCSECNGSGQQTTVQQTPFGRVQQTTTCRACGGEGKTYSEDCSECRGSGRVRRTRDVTITIPAGFRDGQRLR 247          
The following BLAST results are available for this feature:
BLAST of FC873460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CHLP81.002e-2431.03Chaperone protein dnaJ OS=Chlorobaculum parvum (st... [more]
DNAJ_CAMHC1.002e-2431.28Chaperone protein dnaJ OS=Campylobacter hominis (s... [more]
DNAJ_BRAJA1.002e-2433.33Chaperone protein dnaJ OS=Bradyrhizobium japonicum... [more]
DNJA3_MOUSE1.309e-2432.43DnaJ homolog subfamily A member 3, mitochondrial O... [more]
DNJA3_HUMAN1.309e-2431.96DnaJ homolog subfamily A member 3, mitochondrial O... [more]
DNAJ_RICRO1.309e-2429.63Chaperone protein dnaJ OS=Rickettsia rickettsii (s... [more]
DNAJ_RICPU1.309e-2429.63Chaperone protein dnaJ OS=Rickettsia peacockii (st... [more]
DNAJ_PSEFS1.309e-2433.18Chaperone protein dnaJ OS=Pseudomonas fluorescens ... [more]
DNAJ_ORITB1.309e-2430.14Chaperone protein dnaJ OS=Orientia tsutsugamushi (... [more]
DNAJ_HALME1.309e-2429.73Chaperone protein dnaJ OS=Halobacterium mediterran... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA03FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873460 ID=FC873460; Name=FC873460; organism=Citrus clementina; type=EST; length=691bp
TAACGGCACCAGCTATAATCTTTTTGATTTTGTTAATGTCTTCTTGTTTT
GATTATGCAGTATCATCCGGATATCAACAAGAGTCCTGGAGCTGAAGAGA
AGTTCAAAGAGATAAGTTCTGCGTATGAGGTCCTTTCAGATGATGAGAAA
AGATCTGTATATGATCGCTTTGGTGAGGCAGGTATAACTGGAGAATATGA
TGGATTGAGCAACACTTCACAGGGGGTGGATCCTTTTGAATTATATAGTG
CATTCTTTGGTGGTTCAGATGGGCTCTTTGGAGGAGTGGGTGAGGCCGGA
GGCATTAACTTCAATTTTGGAAACAAAGGAAATTTTGGTCTTGACATTCG
GTATGACCTGCATTTGAGCTTTGAAGAATCAATTTTTGGAGGACAGCGTG
GGATTGAAGTTTCTTGTTTTGAAACATGTGATAGTTGTGGTGGAACTGGT
GCCAAATCTAGTAATTGCATACAATCATGTAAAGCTTGTTGGGGTAGAGG
AGGAGTACTGAAAACTCAGAGAACACCATTTGGATTAATCTCACAGGTAT
CTACATGCTCTAAGTGTGGTGGTGATGGTAAGATAATAATTGATCATTGC
CGAAGATGTGGTGGTAATGGTGAAGTACAGTCAAAAAGAAGTATGAAAGT
GGTTATCCCACCTGGTGTTAGTAACGGAGCCACCATGCAAA
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