FC873460

Overview
NameFC873460
Unique NameFC873460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_AGRVS (Chaperone protein dnaJ OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 73/218 (33.49%), Postives = 99/218 (45.41%), Query Frame = 1
Query:   49 LIMQYHPDINKSPG---AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVD-PFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L M++HPD  K+PG   +E KFKEI+ AYE L D +KR+ YDRFG A    E  G+ +   G       +S                               D+RY++ +S EE+  G    I V    TC+ C G+GAK      +C  C G G V   Q    G  S   TC  C G G+ I D C +C G G V  +R + V IP G+ +G  ++
Sbjct:   28 LAMKFHPD--KNPGDAESERKFKEINEAYETLKDPQKRAAYDRFGHAAF--EQGGMGSAGGGGGFAGGGFSDIFEDIFGEMMGGGRGGNARGRSTGGRERGADLRYNMEISLEEAFTGKTAQIRVPTSITCEVCSGSGAKPGTKPTTCATCQGSGRVRAAQ----GFFSIERTCPTCQGRGQTISDPCGKCHGQGRVTEERQLSVSIPSGIEDGTRIR 237          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOBA (Chaperone protein dnaJ OS=Rhodopirellula baltica GN=dnaJ PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.709e-24
Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 1
Query:   49 LIMQYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L ++YHPD N+  G A  KFKE + AYEVLSD  KR+ YD++G AG+ G       T Q  D  +++ A                              D+R D+ L+ EE+  G  + I      +CD+C G+GA + +   +C  C G+G V+++     G++   +TC  C G GK I + C +C G G    K  M V IP GV +G
Sbjct:   29 LAIKYHPDSNRDDGSATAKFKEATEAYEVLSDANKRARYDQYGHAGVEGA------TQQYGDVEDIFEAFGDLFGGGFGDFFGGGSRRGGGRRRVRRGADVRCDVTLTLEEAARGCHKDIVFRRRVSCDTCDGSGAAAGSEPVTCTMCGGQGQVIQSA----GILRVQTTCPTCKGAGKQIGEPCGKCRGTGTQNEKAEMNVEIPAGVDDG 229          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_PROVI (Chaperone protein dnaJ OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.709e-24
Identity = 69/222 (31.08%), Postives = 107/222 (48.20%), Query Frame = 1
Query:   49 LIMQYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI-----TGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXL-------DIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSN 675
            L ++YHPD N  +  AE+ FKE++ AYEVLS+D+KR  YD+FG AG+     +G   G      G D  +++SA                                     D++  L LS EE   G ++ +++     C  C G+G+K+    ++C  C G G V +  +T FG    ++ C  CGG+G+I+ D C  C G G  Q + ++KV +P GV +
Sbjct:   27 LALKYHPDKNPDNKDAEDHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGAGAYGAG-GADFSDIFSAFNDMFGGGGGGRGRGGFEDAFGGGQRRSRASAGIQGTDLKIRLKLSLEEIAKGVEKTLKIKKQVPCKECNGSGSKTG-ATETCPTCHGTGEVRQASKTMFGQFVNIAACPTCGGEGRIVKDRCPACYGEGIKQGEVTVKVTVPAGVQD 246          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_NATPD (Chaperone protein dnaJ OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 62/212 (29.25%), Postives = 100/212 (47.17%), Query Frame = 1
Query:   58 QYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG-EAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            +YHPD++  P AEEKFK++  A EVL DDEKR +YD+ G E     E  G ++T +G                                       D++  L +  E++  G  + + V+  E C  C G G       ++C AC GRG     ++T  G + Q   C +C G G I  + C  C G+G+V+++ +++V +P G+ +G T++
Sbjct:   30 EYHPDVSDDPNAEEKFKQVKKAKEVLLDDEKRRMYDQMGHERFQEAEKRGATDTDRGRGGMGGMGGGGMGGMNDIFEQFFGGGGRSQSRSGPRQGSDLKTRLKVDLEDAYHGVTKQLTVTRPEECPDCDGAGHPPDADSRTCSACDGRGQQTTVRQTALGRVQQTRECPQCDGKGTIYSETCSTCRGDGQVRNETTLQVEVPAGIRDGQTLR 241          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_BURP8 (Chaperone protein dnaJ OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 66/211 (31.28%), Postives = 99/211 (46.92%), Query Frame = 1
Query:   49 LIMQYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M++HPD N  +  AEE FKE   AYE+LSD +KR+ YD++G AG+     G      G   F  ++               A               D+RY + ++ E++  G    I V  + +C+ C G+GAK     ++C  C G G V  +Q    G  S   TC KC G G  I + C  C G G+ +  ++++V IP G+ +G
Sbjct:   28 LAMKHHPDRNPGNKDAEEHFKEAKEAYEMLSDSQKRAAYDQYGHAGVDPNMAG-----AGAQGFGGFADAFGDIFGDIFGQAAAGGRGGRSGPQVYRGADLRYSMEITLEQAAHGYDTQIRVPSWVSCEICHGSGAKPGTKPETCPTCNGSGAVRMSQ----GFFSIQQTCPKCHGTGTYIPEPCTHCHGAGKTKETKTLEVKIPAGIDDG 229          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_PARDP (Chaperone protein dnaJ OS=Paracoccus denitrificans (strain Pd 1222) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 69/212 (32.55%), Postives = 97/212 (45.75%), Query Frame = 1
Query:   58 QYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            Q HPD NK    +E  FKE++ AYE L DD+K++ YDRFG A       G    +   D    + +                              D+RY+L +S EE+  G Q+ I V     C +C GTGA+ +    +C  C G G V  TQ    G  +   TC  C G G+I+ + C+ C G G VQ +R++ V IP GV  G  ++
Sbjct:   31 QLHPDRNKDCKVSEAAFKEVNEAYECLKDDQKKAAYDRFGHAAFENGGGGFGRGNGHGD----FGSAFADVFEDLFGDMMGRRAGGGGRSRASRGQDLRYNLRVSLEEAYNGAQKTINVPGSVACAACNGTGAEGAVEPATCPTCSGMGKVRATQ----GFFTVERTCPTCSGHGQIVKNPCQECRGAGRVQKERTLSVNIPAGVETGTRIR 234          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_HALWD (Chaperone protein dnaJ OS=Haloquadratum walsbyi (strain DSM 16790) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 66/219 (30.14%), Postives = 98/219 (44.75%), Query Frame = 1
Query:   58 QYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYD-----RFGEAGITGEYDGLSNTSQGV---DPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            +YHPD++  P AEEKFK+I  A EVL+D EKR +YD     RF +A   G   G  N+S G    DPF                                   +++  + L  EE   G ++   V   E C  C G G  S   +++C  C G+G     + T  G + Q  TC +C G G++    C  C G+G  + + ++ V IP G+ +G T++
Sbjct:   30 KYHPDVSDDPNAEEKFKKIKKAKEVLTDGEKRQMYDQLGHDRFQQAEKRGGVGGGGNSSGGSARGDPFGGMGGQGSPFGDIFEQFFGGGQGQRRQGNRPRQGQNLQTRVQLDLEEVYTGVEKQFTVRRPEKCPDCNGRGHPSDADVRTCPQCNGQGQTTTVRETALGRVQQTQTCPRCDGSGEMYTQTCSTCNGDGVTRQEATLSVDIPAGIRDGQTLR 248          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_ERWT9 (Chaperone protein dnaJ OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 68/217 (31.34%), Postives = 99/217 (45.62%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEE-KFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQG------VDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M++HPD N+     E KFKEI  AYE+L+D +KR+ YD++G A    E  G+     G       D  +++                A               D+RY++ L+ EE++ G  + I +   E C  C G+GAK+    Q+C  C G G V   Q    G  +    C  C G G +I D C  C G+G V+  +++ V IP GV  G
Sbjct:   28 LAMKFHPDRNQGDKESEGKFKEIKEAYEILTDGQKRAAYDQYGHAAF--EQGGMGGGGHGGFGGGGADFSDIFGDVFGDIFGGGRRQQRAARGA-----------DLRYNMELTLEEAVRGVSKEIRIPTLEECGVCHGSGAKAGTKPQTCSTCHGAGQVQMRQ----GFFTVQQACPTCHGRGSVIKDPCNACHGHGRVEKSKTLSVKIPAGVDTG 227          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_ENTS8 (Chaperone protein dnaJ OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 68/217 (31.34%), Postives = 102/217 (47.00%), Query Frame = 1
Query:   49 LIMQYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT------GEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M++HPD N+    AE KFKEI  AYE+L+D +KR+ YD++G A         G + G      G D  +++                +               D+RY++ L+ EE++ G  + I +   E C+ C G+GAK  +  Q+C  C G G V   Q    G  +   TC  C G G +I D C  C G+G ++  +++ V IP GV  G
Sbjct:   28 LAMKFHPDRNQGDKEAEAKFKEIKEAYEILTDAQKRAAYDQYGHAAFEQGGMGGGGFGG--GFGNGADFSDIFGDVFGDIFGGGRGRRASRGA------------DLRYNMELTLEEAVRGVTKEIRIPTLEECEVCHGSGAKPGSQPQTCPTCHGAGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNSCHGHGRIEKTKTLSVKIPAGVDTG 226          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_HALLT (Chaperone protein dnaJ OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 64/228 (28.07%), Postives = 102/228 (44.74%), Query Frame = 1
Query:   58 QYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE-----------------AGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            ++HPD++    AEE+FK I  A EVL+D++KR  YD+ G                   G  G + G      G   FE                                  D+R  L +  EE+  G  + + ++    CD+C G G      +++C  C GRG V + Q+TP G + Q STC +C G G++  + C  CGG+G V+ + ++ V IP G+ +G +++
Sbjct:   30 EHHPDVSDDDDAEERFKAIQKAKEVLTDEQKRQQYDQLGHDRFTEADKRGATGGGGPGGAGGPFGGAGGAG-GAGGFE---------DIFNQFFGGGGGRGGGGGNRPRQGQDLRTGLTIDLEEAFEGATKEVTLTRPTQCDTCDGAGHPPDADVETCSQCNGRGQVQQVQQTPLGRVQQTSTCPRCEGSGELYSEDCADCGGDGVVREEATLSVEIPAGIRSGQSLR 247          
The following BLAST results are available for this feature:
BLAST of FC873460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_AGRVS1.309e-2433.49Chaperone protein dnaJ OS=Agrobacterium vitis (str... [more]
DNAJ_RHOBA1.709e-2433.18Chaperone protein dnaJ OS=Rhodopirellula baltica G... [more]
DNAJ_PROVI1.709e-2431.08Chaperone protein dnaJ OS=Prosthecochloris vibriof... [more]
DNAJ_NATPD2.232e-2429.25Chaperone protein dnaJ OS=Natronomonas pharaonis (... [more]
DNAJ_BURP82.232e-2431.28Chaperone protein dnaJ OS=Burkholderia phymatum (s... [more]
DNAJ_PARDP2.915e-2432.55Chaperone protein dnaJ OS=Paracoccus denitrificans... [more]
DNAJ_HALWD2.915e-2430.14Chaperone protein dnaJ OS=Haloquadratum walsbyi (s... [more]
DNAJ_ERWT92.915e-2431.34Chaperone protein dnaJ OS=Erwinia tasmaniensis (st... [more]
DNAJ_ENTS82.915e-2431.34Chaperone protein dnaJ OS=Enterobacter sakazakii (... [more]
DNAJ_HALLT3.808e-2428.07Chaperone protein dnaJ OS=Halorubrum lacusprofundi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA03FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873460 ID=FC873460; Name=FC873460; organism=Citrus clementina; type=EST; length=691bp
TAACGGCACCAGCTATAATCTTTTTGATTTTGTTAATGTCTTCTTGTTTT
GATTATGCAGTATCATCCGGATATCAACAAGAGTCCTGGAGCTGAAGAGA
AGTTCAAAGAGATAAGTTCTGCGTATGAGGTCCTTTCAGATGATGAGAAA
AGATCTGTATATGATCGCTTTGGTGAGGCAGGTATAACTGGAGAATATGA
TGGATTGAGCAACACTTCACAGGGGGTGGATCCTTTTGAATTATATAGTG
CATTCTTTGGTGGTTCAGATGGGCTCTTTGGAGGAGTGGGTGAGGCCGGA
GGCATTAACTTCAATTTTGGAAACAAAGGAAATTTTGGTCTTGACATTCG
GTATGACCTGCATTTGAGCTTTGAAGAATCAATTTTTGGAGGACAGCGTG
GGATTGAAGTTTCTTGTTTTGAAACATGTGATAGTTGTGGTGGAACTGGT
GCCAAATCTAGTAATTGCATACAATCATGTAAAGCTTGTTGGGGTAGAGG
AGGAGTACTGAAAACTCAGAGAACACCATTTGGATTAATCTCACAGGTAT
CTACATGCTCTAAGTGTGGTGGTGATGGTAAGATAATAATTGATCATTGC
CGAAGATGTGGTGGTAATGGTGAAGTACAGTCAAAAAGAAGTATGAAAGT
GGTTATCCCACCTGGTGTTAGTAACGGAGCCACCATGCAAA
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