FC873460

Overview
NameFC873460
Unique NameFC873460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTE (Chaperone protein dnaJ OS=Clostridium tetani GN=dnaJ PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.463e-32
Identity = 76/211 (36.02%), Postives = 111/211 (52.61%), Query Frame = 1
Query:   49 LIMQYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L ++YHPD N  +  AEE+FKEI+ AY+VLSD +KR+ YD+FG A   G   G S    G + F+L                 +               D++Y ++L+F E++FG ++ + ++  ETC++C GTGAK     ++C  C G G +   + T  G    V+TC  CGG G II D C  C G G V+ ++ +KV IP GV  G
Sbjct:   28 LALKYHPDKNAGNKEAEERFKEINEAYQVLSDPQKRAQYDQFGTADFNGGGAGFS----GFEDFDLGDIFESFFGGGFGGFGGSSRRRNGPQKGP----DVQYSINLTFNEAVFGVEKEVSITKSETCETCTGTGAKPGTNSKTCPKCNGSGQIKVQRNTALGSFVSVNTCDMCGGKGTIISDPCSDCKGKGTVRKQKKIKVNIPAGVDTG 230          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOBB (Chaperone protein dnaJ OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.463e-32
Identity = 81/214 (37.85%), Postives = 108/214 (50.47%), Query Frame = 1
Query:   49 LIMQYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM 687
            L ++YHPD NK +  AEEKFKEI+ AY+VLSD EK+S YD+FG A   G   G    S G   F++                                 DI Y + L+FEE++FG ++ I V+  E+C+ C G+GA+     ++C  C G G V   ++TP G     STC +C G G II   C  C GNG V+  R + V IP GV  G  M
Sbjct:   28 LAIKYHPDKNKGNTEAEEKFKEINEAYQVLSDPEKKSNYDQFGSADFNGGGFG----SGGFGGFDM------GGFGDIFDMFTGGGSSTRRRNGPVNGNDIEYTVTLTFEEAVFGVEKEITVNRSESCEHCNGSGAEPGTSKKTCPTCSGTGQVRVQRQTPLGSFVSTSTCDRCSGTGNIIEKPCTHCRGNGNVRKTRKINVNIPAGVDTGNVM 231          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_CALS8 (Chaperone protein dnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.463e-32
Identity = 84/218 (38.53%), Postives = 108/218 (49.54%), Query Frame = 1
Query:   49 LIMQYHPDINKSPG---AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD----GLSNT-SQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L  QYHPD N  PG   AEEKFKEI+ AYEVLSD EKR  YD+FG A     Y     G S   + G   F+  S              +                DI+ DL L+ +ES+FG ++ I +   E C  CGG+G +       C+ C G G +   Q T FG  + + TC  CGG G II D CR CGG G V+ +R +K+ IP G+ +G
Sbjct:   29 LAKQYHPDAN--PGNKEAEEKFKEINEAYEVLSDPEKRRKYDQFGHAAFDPTYGAQGGGFSGGFTGGFADFDFGS--FGDIFEDLFEGFDIFGSSRRRKEAPRKGADIQVDLELTLKESVFGCEKEIPIYRTEKCSVCGGSGVRPGATPVRCQKCGGTGQIRSRQATFFGEFTTIKTCDACGGVGTIITDPCRECGGTGTVRRQRRVKINIPAGIDDG 242          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_METCA (Chaperone protein dnaJ OS=Methylococcus capsulatus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.105e-31
Identity = 80/211 (37.91%), Postives = 104/211 (49.29%), Query Frame = 1
Query:   49 LIMQYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M+YHPD NK +P AEE+FK +  AY+VLSD +KRS YD+FG AGI     G        D F                  +                D+RY+L L+ EE++ G +  I+V  + TC  CGG+GAK  +   +C  C G+G V   Q    G  S   TC  C G G+ I D CR C G G VQ  +++ V IPPGV  G
Sbjct:   28 LAMKYHPDRNKDNPEAEERFKSVKEAYDVLSDPKKRSAYDQFGHAGIDPSMGGGGGFGFTGDSFS---------DIFGDVFGDIFGGGGRRRGRGQRGSDLRYNLELTLEEAVAGTEAKIKVPTWVTCTECGGSGAKKGSAPVTCPTCHGQGAVRMQQ----GFFSVQQTCPTCRGTGQHISDPCRVCYGQGRVQETKTLSVKIPPGVDTG 225          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_BACHD (Chaperone protein dnaJ OS=Bacillus halodurans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.105e-31
Identity = 73/218 (33.49%), Postives = 110/218 (50.46%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA--------GITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L  +YHPD+NK+P AE+KFKE+  A++ LSD +K++ YD+FG          G  G++ G S      D F+++                A               D++Y + L F+E++FG +  IE+   ETC +C G+GAK     +SC  C G G +   Q TPFG +     C  C G GK I   C  CGG G+V+ ++ + V +P G+ +G
Sbjct:   28 LARKYHPDVNKAPDAEDKFKEVKEAFDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFGGFS------DIFDMFFGGGGGRRNPNAPRQGA---------------DLQYTMTLEFKEAVFGKETTIEIPREETCHTCSGSGAKPGTKPESCPHCGGSGQLNIEQNTPFGRVVNRRVCHHCEGTGKYIKHKCATCGGKGKVRKRKKINVKVPAGIDHG 224          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_ERYRH (Chaperone protein dnaJ OS=Erysipelothrix rhusiopathiae GN=dnaJ PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 75/216 (34.72%), Postives = 105/216 (48.61%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNT-SQGVDPF-ELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L  +YHPDINK  GAE KFKE+  AYEVLSD +KR+ YD+FG A       G     S G D F +++S+                              D    + + F E++FG  + + ++  E C SC G+GA S + I++C  C G G  +  QRTPFG+    +TC  CGG GK I   C  C G G    +  + + IP G+  G  ++
Sbjct:   29 LAKKYHPDINKEDGAEAKFKEVQEAYEVLSDSQKRANYDQFGHAAFDQGAGGFGGGFSGGFDDFGDIFSSFFGGGGGGQRRNPNGPMKGQ----------DRFMSMRIDFMEAVFGANKSVTLNVDEECTSCHGSGAHSKDDIKTCSRCGGTGQTVTQQRTPFGVFQSQATCPDCGGSGKTITKRCGECHGKGFNTKRVEVDIKIPAGIVTGQQLR 234          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOB8 (Chaperone protein dnaJ OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 79/214 (36.92%), Postives = 106/214 (49.53%), Query Frame = 1
Query:   49 LIMQYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM 687
            L ++YHPD N+    AEEKFKEI+ AY+VLSD EK++ YD+FG A   G          G D F++                 +               DI Y + L+FEE++FG ++ I V+  E C+ C G+GA+     ++C  C G G V   ++TP G     STC  C G GKII   C  C G G V+  R +KV IP GV  G  M
Sbjct:   28 LAVKYHPDRNQGNAEAEEKFKEINEAYQVLSDPEKKAKYDQFGSAAFDGSGGFGGGGFGGFDGFDMGGFGDIFESFFGGGGSNSRRRNGPVRGN-----DIEYTITLTFEEAVFGVEKEISVTRNENCEHCHGSGAEPGTNAKTCPTCSGSGQVRVQRQTPLGSFVSTSTCDTCRGTGKIIEKPCSECRGKGSVRKTRKIKVNIPAGVDTGNVM 236          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_BRECH (Chaperone protein dnaJ OS=Brevibacillus choshinensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 72/218 (33.03%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGV----DPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L  QYHPD+NK+  AEEKFKE+  AY+VLS+ +KR+ YDRFG       + G    + G+    D F+++                +               D+++ L + F E++FG +  +E+     CD+C G+GAK    +++CK C G G       TPFG I     C+ C G GK+  + C  C G+G V+ +R + + IP GV +GA ++
Sbjct:   27 LARQYHPDVNKAADAEEKFKEVKEAYDVLSEPQKRAQYDRFGHQDPNQGFGGGGFDASGMGGFGDIFDMFFGGGGRRANPNAPRKGS---------------DLQFGLSIEFTETVFGKETDVEIPKEAECDTCHGSGAKPGTGVETCKTCSGTGQQEVAANTPFGRIVNRRVCTTCEGKGKVFKEKCSSCRGSGRVKVRRKIHLNIPAGVDDGAQLR 229          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_STRR6 (Chaperone protein dnaJ OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.885e-31
Identity = 76/211 (36.02%), Postives = 109/211 (51.66%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFE-LYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L  +YHPDINK PGAE+K+KE+  AYE LSDD+KR+ YD++G AG  G + G  N + G   FE ++S+                              D++Y ++L+FEE+IFG ++ ++      C +C G+GAK      +C  C G G +    +TP G++ +  TC  C G GK I   C  C G G  +   S+ V IP GV  G
Sbjct:   28 LSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQKRAAYDQYGAAGANGGFGGF-NGAGGFGGFEDIFSSFFGGGGSSRNPNAPRQGD------------DLQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAKPGTSPVTCGRCHGAGVINVDTQTPLGMMRRQVTCDVCHGRGKEIKYPCTTCHGTGHEKQAHSVHVKIPAGVETG 225          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_TOLAT (Chaperone protein dnaJ OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 75/211 (35.55%), Postives = 105/211 (49.76%), Query Frame = 1
Query:   49 LIMQYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L M++HPD N  +P +EEKFKE   AYE+LSD +KR+ YD+FG AG+     G      G D  +++                A               D+RY++ L+ EE++ G  + I+V     CD C G+GA++    Q+C  C G G V   Q    G  +    C  C G GKII D CR+C G+G VQ  +++ V IP GV  G
Sbjct:   28 LAMKFHPDRNPDNPESEEKFKEAKEAYEILSDAQKRAAYDKFGHAGVDPNQAGPGGFGGGADFGDVFGDIFGDIFGGGRRSQRAARGS-----------DLRYNMELTLEEAVRGVSKEIKVPTLVECDECHGSGARTGTSAQTCPTCHGSGQVQMRQ----GFFAVTQACPHCHGKGKIITDPCRKCHGDGRVQKTKTLSVKIPAGVDTG 223          
The following BLAST results are available for this feature:
BLAST of FC873460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CLOTE8.463e-3236.02Chaperone protein dnaJ OS=Clostridium tetani GN=dn... [more]
DNAJ_CLOBB8.463e-3237.85Chaperone protein dnaJ OS=Clostridium botulinum (s... [more]
DNAJ_CALS88.463e-3238.53Chaperone protein dnaJ OS=Caldicellulosiruptor sac... [more]
DNAJ_METCA1.105e-3137.91Chaperone protein dnaJ OS=Methylococcus capsulatus... [more]
DNAJ_BACHD1.105e-3133.49Chaperone protein dnaJ OS=Bacillus halodurans GN=d... [more]
DNAJ_ERYRH1.444e-3134.72Chaperone protein dnaJ OS=Erysipelothrix rhusiopat... [more]
DNAJ_CLOB81.444e-3136.92Chaperone protein dnaJ OS=Clostridium beijerinckii... [more]
DNAJ_BRECH1.444e-3133.03Chaperone protein dnaJ OS=Brevibacillus choshinens... [more]
DNAJ_STRR61.885e-3136.02Chaperone protein dnaJ OS=Streptococcus pneumoniae... [more]
DNAJ_TOLAT2.462e-3135.55Chaperone protein dnaJ OS=Tolumonas auensis (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BA03FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873460 ID=FC873460; Name=FC873460; organism=Citrus clementina; type=EST; length=691bp
TAACGGCACCAGCTATAATCTTTTTGATTTTGTTAATGTCTTCTTGTTTT
GATTATGCAGTATCATCCGGATATCAACAAGAGTCCTGGAGCTGAAGAGA
AGTTCAAAGAGATAAGTTCTGCGTATGAGGTCCTTTCAGATGATGAGAAA
AGATCTGTATATGATCGCTTTGGTGAGGCAGGTATAACTGGAGAATATGA
TGGATTGAGCAACACTTCACAGGGGGTGGATCCTTTTGAATTATATAGTG
CATTCTTTGGTGGTTCAGATGGGCTCTTTGGAGGAGTGGGTGAGGCCGGA
GGCATTAACTTCAATTTTGGAAACAAAGGAAATTTTGGTCTTGACATTCG
GTATGACCTGCATTTGAGCTTTGAAGAATCAATTTTTGGAGGACAGCGTG
GGATTGAAGTTTCTTGTTTTGAAACATGTGATAGTTGTGGTGGAACTGGT
GCCAAATCTAGTAATTGCATACAATCATGTAAAGCTTGTTGGGGTAGAGG
AGGAGTACTGAAAACTCAGAGAACACCATTTGGATTAATCTCACAGGTAT
CTACATGCTCTAAGTGTGGTGGTGATGGTAAGATAATAATTGATCATTGC
CGAAGATGTGGTGGTAATGGTGAAGTACAGTCAAAAAGAAGTATGAAAGT
GGTTATCCCACCTGGTGTTAGTAACGGAGCCACCATGCAAA
back to top