FC873466

Overview
NameFC873466
Unique NameFC873466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 42/101 (41.58%), Postives = 64/101 (63.37%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            ++AL YP + IA NAG +GSV+  K+L  D + YGY++ TG Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +       G P    G G
Sbjct:  444 RKALSYPARQIAINAGEDGSVIVGKILEKDQYSYGYDSQTGEYGNLVSKGIIDPTKVVRVAIQNAASVAALLITTEAMVAEVPKKNTG-AGGMPPGGGGMG 543          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_SPHAL (60 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=groL1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN 280
            ++A+  PL+ IA NAG +G+VV+  +L   + + G+NAAT  YE+L AAG+IDPTKVVR  L+ A+SVA   + ++  V E+ E +PAMP G+
Sbjct:  444 RKAIETPLRQIAANAGHDGAVVAGNLLRVGDVEQGFNAATDVYENLKAAGVIDPTKVVRTALQDAASVAGLLITTEAAVSELPEDKPAMPMGS 536          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_PROM2 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9215) GN=groL1 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAM---PAGNPMDNSG 298
            K AL  P K IAKNAG NG VV  ++   +    G+NA +G YEDL  +GI+DPTKV+R  L+ + S+A   L ++  + +I EPEPA    P+G+PM   G
Sbjct:  443 KEALLEPTKQIAKNAGFNGDVVIAEIKRLNK---GFNANSGKYEDLKNSGILDPTKVIRLALQDSVSIAAMLLTTEVAIADIPEPEPAAPGGPSGDPMGGMG 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_BRAJA (60 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groL1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 44/97 (45.36%), Postives = 67/97 (69.07%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMD 289
            +RA+  P + I +NAG +GS+V  K+L + ++ +G+NAA+G Y+DL  AG+IDP KVVR  L+ A+SVA   + ++ ++ E  K+ EPA PA  PMD
Sbjct:  444 RRAIQVPARQIVQNAGEDGSLVVGKLLENSSYNWGFNAASGEYQDLAKAGVIDPAKVVRTALQDAASVAALLITTEALIAEKPKKSEPA-PAAPPMD 539          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 307
            RAL  PLK IA+NAG NG+V++E+V        G+NAAT  + D+  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+   PAG       + Y
Sbjct:  445 RALPAPLKRIAENAGQNGAVIAERV-KEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDNAPAGAGAGGGDFDY 544          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 283
            ++AL  P  LIA+NAG+ G VV EK++ S+  + GYNA T  YE+L+ AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  P   P
Sbjct:  450 QKALVAPAALIAQNAGIEGEVVVEKIMFSE-WEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPTAAP 540          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_LACAC (60 kDa chaperonin OS=Lactobacillus acidophilus GN=groL PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            RAL  P++ IA+NAG +G+VV  K+ S +N + GYNAAT  +E+++ AGIIDPTKV R  L++A+S+A   L ++ VV +I E +P  P        G G
Sbjct:  443 RALSAPVRQIAENAGKDGAVVLNKLESQEN-EIGYNAATDKWENMVEAGIIDPTKVTRTALQNAASIAALLLTTEAVVADIPEDKPEAPQAGAAGAPGMG 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_FRAP2 (60 kDa chaperonin OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=groL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 277
            K+A+  PL+ I  NAG   SVV  +V + + + YGYNAA   Y D++  GI+DPTKV R  L+HA+S+A   + ++ +V EIKE  PAMP G
Sbjct:  444 KKAIEAPLRQIVSNAGGESSVVVNEVKAKEGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMVAEIKEDAPAMPMG 534          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_CLOAB (60 kDa chaperonin OS=Clostridium acetobutylicum GN=groL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNP 283
            +AL  P++ IA NAG+ GSV+ EK+++S+    G++A    Y D+++ GI+DPTKV R  L++A+SVA TFL ++C V +I E + P MP G P
Sbjct:  443 KALEEPVRQIAANAGLEGSVIIEKIINSEKG-IGFDALHEKYVDMLSVGIVDPTKVTRSALQNAASVASTFLTTECAVADIPEKDKPEMPGGAP 535          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_BEUC1 (60 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 307
            K A+  PLK IA NAG+ G VV+EKV S     +G NAATG+YEDL+AAGI DP KV R  L++A+S+A  FL ++ +V +  E   A   G   D  G G+
Sbjct:  442 KVAIDAPLKQIAINAGLEGGVVAEKVRSLPAG-HGLNAATGDYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAIVADKPEKASAPAGGGDGDMGGMGF 542          
The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_BRAJA2.090e-1641.5860 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH601_SPHAL2.090e-1647.3160 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=... [more]
CH601_PROM22.090e-1645.1060 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_BRAJA2.090e-1645.3660 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]
CH601_ANASP2.090e-1643.5660 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]
RUB1_BRANA2.730e-1646.81RuBisCO large subunit-binding protein subunit alph... [more]
CH60_LACAC2.730e-1645.0060 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH60_FRAP22.730e-1646.7460 kDa chaperonin OS=Francisella philomiragia subs... [more]
CH60_CLOAB2.730e-1645.7460 kDa chaperonin OS=Clostridium acetobutylicum GN... [more]
CH60_BEUC12.730e-1648.0460 kDa chaperonin OS=Beutenbergia cavernae (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bp
TAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTG
TTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAA
TATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGG
AATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCT
CGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAG
GAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATA
TGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTC
TGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTT
CTTCTTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTG
AGGATAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACA
ATTGCAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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