FC873466
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16 Identity = 42/101 (41.58%), Postives = 64/101 (63.37%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304 ++AL YP + IA NAG +GSV+ K+L D + YGY++ TG Y +L++ GIIDPTKVVR +++A+SVA + ++ +V E+ + G P G G Sbjct: 444 RKALSYPARQIAINAGEDGSVIVGKILEKDQYSYGYDSQTGEYGNLVSKGIIDPTKVVRVAIQNAASVAALLITTEAMVAEVPKKNTG-AGGMPPGGGGMG 543
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_SPHAL (60 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=groL1 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16 Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN 280 ++A+ PL+ IA NAG +G+VV+ +L + + G+NAAT YE+L AAG+IDPTKVVR L+ A+SVA + ++ V E+ E +PAMP G+ Sbjct: 444 RKAIETPLRQIAANAGHDGAVVAGNLLRVGDVEQGFNAATDVYENLKAAGVIDPTKVVRTALQDAASVAGLLITTEAAVSELPEDKPAMPMGS 536
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_PROM2 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9215) GN=groL1 PE=3 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16 Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAM---PAGNPMDNSG 298 K AL P K IAKNAG NG VV ++ + G+NA +G YEDL +GI+DPTKV+R L+ + S+A L ++ + +I EPEPA P+G+PM G Sbjct: 443 KEALLEPTKQIAKNAGFNGDVVIAEIKRLNK---GFNANSGKYEDLKNSGILDPTKVIRLALQDSVSIAAMLLTTEVAIADIPEPEPAAPGGPSGDPMGGMG 541
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_BRAJA (60 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groL1 PE=2 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16 Identity = 44/97 (45.36%), Postives = 67/97 (69.07%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMD 289 +RA+ P + I +NAG +GS+V K+L + ++ +G+NAA+G Y+DL AG+IDP KVVR L+ A+SVA + ++ ++ E K+ EPA PA PMD Sbjct: 444 RRAIQVPARQIVQNAGEDGSLVVGKLLENSSYNWGFNAASGEYQDLAKAGVIDPAKVVRTALQDAASVAALLITTEALIAEKPKKSEPA-PAAPPMD 539
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16 Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 307 RAL PLK IA+NAG NG+V++E+V G+NAAT + D+ AGI+DP KV R L++A+S+A L ++C+VV+ EP+ PAG + Y Sbjct: 445 RALPAPLKRIAENAGQNGAVIAERV-KEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDNAPAGAGAGGGDFDY 544
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16 Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 283 ++AL P LIA+NAG+ G VV EK++ S+ + GYNA T YE+L+ AG+IDP KV RC L++A+SVA L + +VV+ +P+P P P Sbjct: 450 QKALVAPAALIAQNAGIEGEVVVEKIMFSE-WEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPTAAP 540
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_LACAC (60 kDa chaperonin OS=Lactobacillus acidophilus GN=groL PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16 Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304 RAL P++ IA+NAG +G+VV K+ S +N + GYNAAT +E+++ AGIIDPTKV R L++A+S+A L ++ VV +I E +P P G G Sbjct: 443 RALSAPVRQIAENAGKDGAVVLNKLESQEN-EIGYNAATDKWENMVEAGIIDPTKVTRTALQNAASIAALLLTTEAVVADIPEDKPEAPQAGAAGAPGMG 541
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_FRAP2 (60 kDa chaperonin OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=groL PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16 Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 277 K+A+ PL+ I NAG SVV +V + + + YGYNAA Y D++ GI+DPTKV R L+HA+S+A + ++ +V EIKE PAMP G Sbjct: 444 KKAIEAPLRQIVSNAGGESSVVVNEVKAKEGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMVAEIKEDAPAMPMG 534
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_CLOAB (60 kDa chaperonin OS=Clostridium acetobutylicum GN=groL PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16 Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNP 283 +AL P++ IA NAG+ GSV+ EK+++S+ G++A Y D+++ GI+DPTKV R L++A+SVA TFL ++C V +I E + P MP G P Sbjct: 443 KALEEPVRQIAANAGLEGSVIIEKIINSEKG-IGFDALHEKYVDMLSVGIVDPTKVTRSALQNAASVASTFLTTECAVADIPEKDKPEMPGGAP 535
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_BEUC1 (60 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groL PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16 Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 307 K A+ PLK IA NAG+ G VV+EKV S +G NAATG+YEDL+AAGI DP KV R L++A+S+A FL ++ +V + E A G D G G+ Sbjct: 442 KVAIDAPLKQIAINAGLEGGVVAEKVRSLPAG-HGLNAATGDYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAIVADKPEKASAPAGGGDGDMGGMGF 542 The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bpback to top |