FC873466

Overview
NameFC873466
Unique NameFC873466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 253
            K+A+  PLK IA NAG +GSVV EKV+     K   +G+NAATG Y D+  AGIIDPTKVVR  +E+A+SVA T L ++ ++ ++ E
Sbjct:  444 KKAVRTPLKQIAYNAGYDGSVVLEKVIELGKEKGVSWGFNAATGEYVDMYEAGIIDPTKVVRTAIENAASVAGTMLTAEALIADLPE 530          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_AZOC5 (60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 277
            +RA+  P + I  NAG +GSVV  K+L ++ + +GYNA TG Y D++A+GIIDP KVVR  L+ A+S++   + ++ +VVE+ +     PAMP G
Sbjct:  444 RRAIQAPARQIVANAGDDGSVVVGKILENETYTFGYNAQTGEYVDMVASGIIDPAKVVRTALQDAASISALIITTEALVVELPKKAAAAPAMPGG 538          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 2
Query:    8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 286
            AL  PL  IA+NAG NG+VV+E V S   +  GYNAATG Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + +  AG  M
Sbjct:  446 ALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSSAGGGM 537          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_GEOSL (60 kDa chaperonin OS=Geobacter sulfurreducens GN=groL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE---IKEPEPAMPAG 277
            KR+L  P++ IA+NAGV+GS+V +KV +S +  +GYNAA   Y D++AAGIIDPTKV R  L++A+SVA   L ++ ++ +    + P PAMP G
Sbjct:  443 KRSLEEPIRQIAQNAGVDGSIVVDKVKNSKD-AFGYNAAEDEYVDMLAAGIIDPTKVSRSALQNAASVAGLMLTTEAMIADKPKEEAPMPAMPGG 536          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_BORPD (60 kDa chaperonin OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=groL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 271
            RA+  PL+ I  NAG   SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SVA   L ++  VVE+ E +PA P
Sbjct:  445 RAVEEPLRTIVTNAGEEASVVVNNVLNGKGN-YGYNAATGEYTDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELSEDKPAAP 532          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH603_BRASB (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMD 289
            +RA+  P++ I +NAG +GS+V  K+L  D + +G+NAATG Y+DL+ AG+IDP KVVR  L+ A+SVA   + ++ +V +  +   A  A   MD
Sbjct:  444 RRAIQVPVRQIVQNAGEDGSLVVGKLLEKDTYSWGFNAATGEYQDLVQAGVIDPAKVVRTALQDAASVASLLITTEALVADKPKKAEATQAAPAMD 539          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_SYNS3 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9311) GN=groL1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            +RAL  PL+ IA+NAG NG VV ++V +S     G+NA TGN+EDLM AGI+D +KVVR  L+ A S+A   + ++ VV +  +PEP  PAG   D  G
Sbjct:  443 QRALSAPLRQIAENAGSNGDVVVDRVRNSGE---GFNALTGNFEDLMNAGILDASKVVRLALQDAVSIASLVVTTEVVVAD--KPEPPAPAGGGGDPMG 536          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_SALAI (60 kDa chaperonin 1 OS=Salinispora arenicola (strain CNS-205) GN=groL1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 52/99 (52.53%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA---GNPMD 289
            K AL  PL+ IA NAG+ G VV E V   +   +G NAATG Y DLMAAGIIDP KV R  L++ASS+A  FL ++ VV +  E  PA PA   G  MD
Sbjct:  442 KIALDGPLRQIAVNAGLEGGVVVEHVRGIEAG-HGLNAATGGYVDLMAAGIIDPAKVTRSALQNASSIAALFLTTEAVVADKPEKTPAAPAAPGGGEMD 539          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_RALEJ (60 kDa chaperonin OS=Ralstonia eutropha (strain JMP134) GN=groL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.657e-16
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 277
            RA+  PL+ I  NAG   SVV  KV+    + YGYNAA+G Y DL+  G++DPTKV R  L++A+SVA   L +DC V E   +E  PAMP G
Sbjct:  445 RAMEEPLRQIVLNAGEEASVVVAKVIEGKGN-YGYNAASGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAETPKEESAPAMPGG 536          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_CUPTR (60 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.657e-16
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 277
            RA+  PL+ I  NAG   SVV  KV+    + YGYNAA+G Y DL+  G++DPTKV R  L++A+SVA   L +DC V E   +E  PAMP G
Sbjct:  445 RAMEEPLRQIVLNAGEEASVVVAKVIEGKGN-YGYNAASGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAETPKEESAPAMPGG 536          
The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_AQUAE2.730e-1651.7260 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH602_AZOC52.730e-1644.2160 kDa chaperonin 2 OS=Azorhizobium caulinodans (s... [more]
CH601_PROMT2.730e-1647.3160 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_GEOSL3.566e-1648.4260 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH60_BORPD3.566e-1649.4460 kDa chaperonin OS=Bordetella petrii (strain ATC... [more]
CH603_BRASB3.566e-1642.7160 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]
CH601_SYNS33.566e-1648.4860 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH601_SALAI3.566e-1652.5360 kDa chaperonin 1 OS=Salinispora arenicola (stra... [more]
CH60_RALEJ4.657e-1649.4660 kDa chaperonin OS=Ralstonia eutropha (strain JM... [more]
CH60_CUPTR4.657e-1649.4660 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bp
TAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTG
TTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAA
TATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGG
AATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCT
CGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAG
GAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATA
TGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTC
TGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTT
CTTCTTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTG
AGGATAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACA
ATTGCAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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