FC873466

Overview
NameFC873466
Unique NameFC873466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_ARTS2 (60 kDa chaperonin 2 OS=Arthrobacter sp. (strain FB24) GN=groL2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 41/81 (50.62%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE 244
            +RAL  PL+ IA+NAG +G VV+ KV  S  ++ G+NA +G+YEDL+AAG+IDP KV R  L +A+S+A   L ++ +VVE
Sbjct:  444 RRALVQPLRWIAQNAGFDGYVVAAKVAESAVNQ-GFNAKSGDYEDLIAAGVIDPVKVTRAALRNAASIAALVLTTETLVVE 523          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN 280
            +RAL  PL+ IA+NAG NG+++ E+V        GY+AA   Y ++  AGI+DP KV R  L++A+S+A   L ++C++V+  EP+   PAG+
Sbjct:  444 ERALSAPLRRIAENAGQNGAIIVERVKEKP-FDVGYDAAKDEYVNMFDAGIVDPAKVTRSALQNAASIAGMVLTTECIIVDKPEPKENNPAGS 535          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_STRAL (60 kDa chaperonin 1 OS=Streptomyces albus G GN=groL1 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN 280
            +RA   PL+ IA+NAG+ G V++ KV   D  + G+NAATG Y DL+ AG+IDP KV R  LE+A+S+A   L ++ +VVE K  E    AG+
Sbjct:  444 RRAAVEPLRWIAENAGLEGYVITTKVAELDKGQ-GFNAATGEYGDLVKAGVIDPVKVTRSALENAASIASLLLTTETLVVE-KPAEEEPEAGH 534          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_CHLCV (60 kDa chaperonin 1 OS=Chlamydophila caviae GN=groL1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE----PAMPAGNPMD 289
            +AL  PLK IA NAG  G+++ ++VLS  + + GY+A    Y D++ AGI+DPTKV RC LE A+SVA   L ++ ++ +I E +    PAMP G  MD
Sbjct:  447 KALSAPLKQIAANAGKEGAIICQQVLSRSSSE-GYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEALIADIPEEKSSSAPAMP-GAGMD 543          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 37/90 (41.11%), Postives = 61/90 (67.78%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 274
            +AL  P++ IA+NAG +G+V+ EK+L+SD+  YG++A  G + ++   GIIDP KV R  L++A+S+A   L ++ +VVE  E +   P+
Sbjct:  444 KALSAPIRQIAENAGYDGAVIIEKILASDDPAYGFDALRGEFGNMFEKGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKETPS 533          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_STAHJ (60 kDa chaperonin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=groL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE 259
            +AL  P++ IA+NAG+ GSV+ E++  +D    G+NAAT  + +++  GI+DPTKV R  L+HA+SVA  FL ++ VV  I EP+
Sbjct:  442 KALSAPVRQIAENAGLEGSVIVERLKHADAG-VGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAVVATIPEPD 525          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_SHEPA (60 kDa chaperonin OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=groL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            RA+  PL+ IA NAG  GSVV+  V +   + YGYNA    Y D++  GI+DPTKV R  L+ ASS+A   + ++C+V E+KE    M     M   G
Sbjct:  445 RAMEAPLRQIAANAGEEGSVVANNVKNGTGN-YGYNAGNDTYGDMLEMGILDPTKVTRSALQFASSIAGLMITTECMVAEVKEDAADMGGMGGMGGMG 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_PELPB (60 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            +RAL  PL+ I  N G  +G+VV E+V +     +G+NA T  YE+L+ AG++DPTKV R  LE+A+SVA   L ++  + ++KE +  MPA  P    G G
Sbjct:  444 RRALEEPLRQIVANTGTTDGAVVLERVKAGTGD-FGFNARTEQYENLVEAGVVDPTKVTRSALENAASVASILLTTEAAITDVKEEKSDMPAMPPGGMGGMG 544          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_PELCD (60 kDa chaperonin OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=groL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP------AMPAGNPMDNSGYG 304
            KRA+  PL+ I+ NAG  GS+V  +V    +  YG+NAA   Y D++ AGIIDPTKVVR  L++ASSVA   L ++  + E+ + E        MP G P    G G
Sbjct:  443 KRAMEEPLRQISANAGAEGSIVVNQVRGGAD-TYGFNAAADEYCDMIEAGIIDPTKVVRSALQNASSVAGLMLTTEACIAELPKEEAGGGMPGGMPGGMPGGMGGMG 548          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_LACS1 (60 kDa chaperonin OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=groL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-----PAMP 271
            KRAL  P++ IA+NAG+ GSV+ EK L       G+NAAT  + D++ AGI+DPTKV R  L++A+SV+   L ++ VV +  EPE     PA P
Sbjct:  441 KRALEEPVRQIAENAGLEGSVIVEK-LKEQKPGVGFNAATNEWVDMVEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADKPEPESNNQMPATP 534          
The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ARTS22.555e-1450.6260 kDa chaperonin 2 OS=Arthrobacter sp. (strain FB... [more]
CH601_THEVL2.555e-1441.9460 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]
CH601_STRAL2.555e-1447.3160 kDa chaperonin 1 OS=Streptomyces albus G GN=gro... [more]
CH601_CHLCV2.555e-1445.4560 kDa chaperonin 1 OS=Chlamydophila caviae GN=gro... [more]
CH60_THENE3.337e-1441.1160 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH60_STAHJ3.337e-1445.8860 kDa chaperonin OS=Staphylococcus haemolyticus (... [more]
CH60_SHEPA3.337e-1442.8660 kDa chaperonin OS=Shewanella pealeana (strain A... [more]
CH60_PELPB3.337e-1442.1660 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH60_PELCD3.337e-1442.9960 kDa chaperonin OS=Pelobacter carbinolicus (stra... [more]
CH60_LACS13.337e-1446.3260 kDa chaperonin OS=Lactobacillus salivarius subs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bp
TAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTG
TTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAA
TATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGG
AATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCT
CGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAG
GAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATA
TGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTC
TGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTT
CTTCTTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTG
AGGATAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACA
ATTGCAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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