FC873466

Overview
NameFC873466
Unique NameFC873466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_PARDE (60 kDa chaperonin OS=Paracoccus denitrificans GN=groL PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            +RAL  P++ IA+NAGV+G+VV+ KV  S +  +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ E  +PEP  PAG   D  G G
Sbjct:  444 RRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAE--KPEPKAPAGGMPDMGGMG 542          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_PARD8 (60 kDa chaperonin OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=groL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            KRA+  PL+ I  NAG  G+V+ +KV       +GYNA    +E+L  AG+IDP KV R  LE+A+S+A  FL ++CV+ E KE  PAMP  NP    G G
Sbjct:  444 KRAIEEPLRQIVANAGKEGAVIVQKVKEGKGD-FGYNARKDCFENLCEAGVIDPAKVTRVALENAASIAGMFLTTECVIAEKKEETPAMPPMNPGMGGGMG 543          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_LACHE (60 kDa chaperonin OS=Lactobacillus helveticus GN=groL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 48/97 (49.48%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP---AGNPM 286
            RAL  P++ IA+NAG +GSV+ +K+   +N + GYNAAT  +E+++ AGIIDPTKV R  L++A+S+A   L ++ VV EI EP+ A P   AG PM
Sbjct:  443 RALSAPVRQIAENAGKDGSVILDKLEHQEN-EIGYNAATDKWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAVVAEIPEPKQAAPQGGAGAPM 538          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            +RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SVA   L ++C + E  EP+  MP    M   G
Sbjct:  444 RRAIEEPLRQIASNAGFEGSIVVERVREGKDG-FGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMPMPGGMGGMG 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            +RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SVA   L ++C + E  EP+  MP    M   G
Sbjct:  444 RRAIEEPLRQIASNAGFEGSIVVERVREGKDG-FGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMPMPGGMGGMG 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH603_BRASO (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ORS278) GN=groL3 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 298
            +AL  P++ IA+NAGV GS+V  K+L   +  +G++A T +Y D++A GIIDP KVVR  L+ ASSVA   + ++ +V E+ K+  PAMPAG  M   G
Sbjct:  445 KALEAPMRQIAENAGVEGSIVVGKILEEKSETFGFDAQTEDYVDMVAKGIIDPAKVVRTALQDASSVAGLLVTTEAMVAELPKDAAPAMPAGGGMGGMG 543          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 2
Query:    8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 286
            AL  PL  IA+NAG NG+VV+E V S   +  GYNAATG Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + + PAG  M
Sbjct:  446 ALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSPAGGGM 537          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_ANADE (60 kDa chaperonin 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            +RA+  PL+ I+ N G  GS+V  KV  +    +G+NAATG YEDL+ AG+IDPTKV R  L++A+SVA   L +  +V E  + E A PAG  M   G
Sbjct:  443 RRAIEEPLRQISGNGGYEGSIVVNKVKEAKEAAFGFNAATGEYEDLVKAGVIDPTKVSRSALQNAASVASLMLTTMAMVAEKPKEESAAPAGGGMGGMG 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_BURXL (60 kDa chaperonin 2 OS=Burkholderia xenovorans (strain LB400) GN=groL2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.212e-17
Identity = 48/93 (51.61%), Postives = 61/93 (65.59%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 283
            RAL  PL++IA NAG   SVV  KVLS   + YGYNAATG Y DL+  G++DPTKV R  L++A+S+A   L +D  V E  + E A+PA  P
Sbjct:  445 RALEAPLRVIAANAGDEPSVVVAKVLSGKGN-YGYNAATGEYGDLVETGVVDPTKVTRTALQNAASIAGLILTTDATVAEAPKEEKAVPAPAP 536          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.212e-17
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 277
            +RAL  P + IA+NAG   S+V  K+L  D   YGYNA TG Y D++  GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  443 RRALQAPARQIAENAGDEASIVVGKILDKDQDNYGYNAQTGEYGDMIGMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PARDE3.225e-1745.5460 kDa chaperonin OS=Paracoccus denitrificans GN=g... [more]
CH60_PARD83.225e-1746.5360 kDa chaperonin OS=Parabacteroides distasonis (s... [more]
CH60_LACHE3.225e-1749.4860 kDa chaperonin OS=Lactobacillus helveticus GN=g... [more]
CH60_DESVV3.225e-1745.4560 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH3.225e-1745.4560 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH603_BRASO3.225e-1746.4660 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]
CH602_PROM13.225e-1748.3960 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_ANADE3.225e-1746.4660 kDa chaperonin 2 OS=Anaeromyxobacter dehalogena... [more]
CH602_BURXL4.212e-1751.6160 kDa chaperonin 2 OS=Burkholderia xenovorans (st... [more]
CH601_RHIEC4.212e-1747.3160 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bp
TAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTG
TTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAA
TATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGG
AATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCT
CGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAG
GAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATA
TGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTC
TGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTT
CTTCTTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTG
AGGATAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACA
ATTGCAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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