FC873466

Overview
NameFC873466
Unique NameFC873466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_NEIMA (60 kDa chaperonin OS=Neisseria meningitidis serogroup A GN=groL PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            RA+  PL+ I  NAG   SVV  KVL    + YGYNA +G Y D++  G++DP KV R  L+HA+S+A   L +DC++ EI E +PAMP    M   G
Sbjct:  445 RAVESPLRQIVANAGGEPSVVVNKVLEGKGN-YGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAMPDMGGMGGMG 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_LAWIP (60 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groL PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 271
            +R+L  PL+ IA NAG  GS+V EKV  + +  +G+NAA+G YEDL+ AG+IDP KV R  L++A+SVA   L ++C + E  EP+  MP
Sbjct:  444 RRSLEEPLRQIAANAGYEGSIVVEKVREAKDG-FGFNAASGEYEDLIKAGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMP 532          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_LACH4 (60 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groL PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP---AGNPM 286
            RAL  P++ IA+NAG +GSV+ +K+   +N + GYNAAT  +E+++ AGIIDPTKV R  L++A+S+A   L ++ VV EI EP+ + P   AG PM
Sbjct:  443 RALSAPVRQIAENAGKDGSVILDKLEHQEN-EIGYNAATDKWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAVVAEIPEPKQSAPQGGAGAPM 538          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_LACBA (60 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=groL PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 50/95 (52.63%), Postives = 62/95 (65.26%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAGNP 283
            RAL  P++ IA+NAGV GSVV E  L  +    GYNAA   YED++AAGI DPTKV R  L++A+SV+   L ++ VV E  E  P PA PA NP
Sbjct:  442 RALEEPVRQIAQNAGVEGSVVVEH-LKGEKPGVGYNAADNKYEDMVAAGITDPTKVTRSALQNAASVSALLLTTEAVVAEKPEDNPAPAAPAANP 535          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_BACFO (60 kDa chaperonin OS=Bacteroides forsythus GN=groL PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            KRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YEDL  AG++DP KV R  LE+A+S+A  FL ++CVV + KE  PA P    M   G
Sbjct:  444 KRAIEEPLRQIVNNAGKEGAVVVQKVKEGTG-AFGYNARTDVYEDLSEAGVVDPAKVTRIALENAASIAGMFLTTECVVADKKEEAPAPPMNPGMGGMG 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            +AL  PL  +A NAGV GSV+ EKV  +  ++ GYN  TG  EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  +PEPA PA   M   G
Sbjct:  447 KALEAPLHQLASNAGVEGSVIVEKVKEATGNQ-GYNVITGKIEDLIAAGIIDPAKVVRSALQNAASIAGMVLTTEALVVE--KPEPAAPAMPDMGGMG 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 289
            +RA+  P++ IA+NAG  GS++  K+    +  YG+NA TG Y DL A G+IDP KVVR  L+ A+SVA   + ++ ++ E   KE  PAMPAG  MD
Sbjct:  444 RRAIEAPVRQIAENAGAEGSIIVGKLREKSDFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASVAGLLVTTEAMIAEKPKKEAAPAMPAGAGMD 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_PARUW (60 kDa chaperonin 2 OS=Protochlamydia amoebophila (strain UWE25) GN=groL2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAG 277
            R+L  PL+ IA+NAG  G+++ + V      K GYNA TG Y D++ AGI+DPTKVVRC LE+A SVA   L ++ +V +I E  P PA P G
Sbjct:  446 RSLSAPLRQIAENAGQEGAIILQAV-EKMKEKEGYNALTGEYVDMITAGILDPTKVVRCALENAVSVAAMLLTTEAIVADIPEEKPAPAAPVG 537          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 289
            +RA+  P + I +NAG +GS+V  K+L  + + +G+NAATG Y+DL+  G+IDP KVVR  L+ A+SVA   + ++ +V E   K+  PA+P G  MD
Sbjct:  444 RRAIQVPARQIIQNAGEDGSLVVGKLLEKNTYNWGFNAATGEYQDLVGVGVIDPAKVVRTALQDAASVASLLITTEALVAEKPKKDVAPALPPGGGMD 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_ERYLH (60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPA-MPA 274
            +RAL  P + IA+NAG +G+ +  K+L  D++ +G+NAATG YEDL+ +G+IDP KVVR  L+ A+SVA   + ++ +V E+ KE  PA MPA
Sbjct:  444 RRALRAPARQIAENAGEDGAYIVGKLLEGDDYNHGFNAATGEYEDLVKSGVIDPAKVVRTALQDAASVASLLITTEALVAELPKEDTPAPMPA 536          
The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NEIMA7.185e-1745.9260 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_LAWIP7.185e-1748.8960 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH60_LACH47.185e-1748.4560 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH60_LACBA7.185e-1752.6360 kDa chaperonin OS=Lactobacillus brevis (strain ... [more]
CH60_BACFO7.185e-1747.4760 kDa chaperonin OS=Bacteroides forsythus GN=groL... [more]
CH602_SYNY37.185e-1751.0260 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH602_RHIEC7.185e-1745.9260 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
CH602_PARUW7.185e-1749.4660 kDa chaperonin 2 OS=Protochlamydia amoebophila ... [more]
CH601_NITWN7.185e-1743.8860 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]
CH601_ERYLH7.185e-1748.3960 kDa chaperonin 1 OS=Erythrobacter litoralis (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BA09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bp
TAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTG
TTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAA
TATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGG
AATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCT
CGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAG
GAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATA
TGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTC
TGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTT
CTTCTTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTG
AGGATAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACA
ATTGCAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top