FC873466
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17 Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-GNPMD 289 ++L PL+ IA NAGV GSV+ EKV +S+ GY+A G Y +++ +GI+DPTKV R L++A+SV+ TFL ++ V EI + EPAMPA G MD Sbjct: 443 KSLEEPLRQIASNAGVEGSVIIEKVKNSEVGT-GYDALYGKYVNMIKSGIVDPTKVTRSALQNAASVSATFLTTEAAVAEIPQKEPAMPAPGMGMD 537
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17 Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-GNPMD 289 ++L PL+ IA NAGV GSV+ EKV +S+ GY+A G Y +++ +GI+DPTKV R L++A+SV+ TFL ++ V EI + EPAMPA G MD Sbjct: 443 KSLEEPLRQIASNAGVEGSVIIEKVKNSEVGT-GYDALYGKYVNMIKSGIVDPTKVTRSALQNAASVSATFLTTEAAVAEIPQKEPAMPAPGMGMD 537
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH603_NITHX (60 kDa chaperonin 3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL3 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17 Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAGNPMDNSGY 301 +AL P++ IA+NAGV GS+V KVL + +G++A Y D++A GIIDP KVVR L+ A+SVA + ++ +V E+ +EP PAMP G M G+ Sbjct: 445 KALEAPIRQIAENAGVEGSIVVGKVLENKTETFGFDAQKEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKEEPAPAMPGGGGMGGMGF 545
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17 Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 2 Query: 8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 286 AL PL IA+NAGVNG+VV+E V S ++ GYNAA G Y D+++AGI+DP KV R L++A+S+A L ++C+V ++ E + A AG M Sbjct: 446 ALTAPLMRIAENAGVNGAVVAENVKSKSFNE-GYNAANGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADMPEKKEAAAAGGGM 537
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17 Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 271 +RAL PL IA N+GV GSV+ EKV S+D GYN TG YEDL+AAGI+DP VVR L++A S+A L ++ VVVE E + A P Sbjct: 444 RRALEAPLNQIANNSGVEGSVIVEKVRSTD-FSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAVVVEKPEKKGAAP 532
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_BRASB (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL1 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17 Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 298 +AL P++ IA+NAGV GS+V K+L + +G++A + +Y D++A GIIDP KVVR L+ ASSVA + ++ +V E+ KE PAMPAG M G Sbjct: 445 KALEAPVRQIAENAGVEGSLVVGKILEEKSETFGFDAQSEDYVDMVAKGIIDPAKVVRTALQDASSVAGLLVTTEAMVAELPKEAAPAMPAGGGMGGMG 543
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_THIDA (60 kDa chaperonin OS=Thiobacillus denitrificans (strain ATCC 25259) GN=groL PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16 Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSG 298 RA+ PL+ I KN G SVV KVL + + +GYNA T Y D++A G++DPTKV R L++A+S+A L +DC+V ++ E + PAMP G M + G Sbjct: 445 RAIEEPLRQIVKNCGDEPSVVVNKVLEGEGN-FGYNAGTSEYGDMVAMGVLDPTKVTRTALQNAASIAGLMLTTDCMVADLPEDKAPAMPMGGGMGDMG 542
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_LACSS (60 kDa chaperonin OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=groL PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16 Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304 RAL P++ IA NAG+ GSV+ EKV S + GYNAA GN+E+++ AGI+DPTKV R L++A+SVA L ++ VV + E PA AG MD S G Sbjct: 442 RALEEPVRQIATNAGLEGSVIVEKV-KSQPVEVGYNAANGNWENMIEAGILDPTKVTRSALQNAASVAALMLTTEAVVADKPEDNPAPAAG--MDPSAMG 538
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_CLONN (60 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groL PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16 Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298 +RAL P++ IA NAG+ GSV+ +K+ +S++ G++A G Y ++M GI+DP KV R L++A+SVA TFL ++CVV EI E P MPA M G Sbjct: 442 RRALEEPVRQIAANAGLEGSVIIDKIKNSEDG-IGFDALEGEYTNMMQKGIVDPAKVTRSALQNAASVASTFLTTECVVAEIPEKNP-MPAAPGMGGMG 538
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_BIFLI (60 kDa chaperonin OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=groL PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16 Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 274 RA+ P+K IA+NAGV+G VV V S + + G+NAAT YEDL+AAG+ DP KV R L++A+S+A FL ++ VV EP+PA PA Sbjct: 446 RAIEAPIKQIAENAGVSGDVVINTVRSLPDGE-GFNAATDTYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAVVANKPEPKPAAPA 534 The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bpback to top |