FC873466

Overview
NameFC873466
Unique NameFC873466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-GNPMD 289
            ++L  PL+ IA NAGV GSV+ EKV +S+    GY+A  G Y +++ +GI+DPTKV R  L++A+SV+ TFL ++  V EI + EPAMPA G  MD
Sbjct:  443 KSLEEPLRQIASNAGVEGSVIIEKVKNSEVGT-GYDALYGKYVNMIKSGIVDPTKVTRSALQNAASVSATFLTTEAAVAEIPQKEPAMPAPGMGMD 537          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-GNPMD 289
            ++L  PL+ IA NAGV GSV+ EKV +S+    GY+A  G Y +++ +GI+DPTKV R  L++A+SV+ TFL ++  V EI + EPAMPA G  MD
Sbjct:  443 KSLEEPLRQIASNAGVEGSVIIEKVKNSEVGT-GYDALYGKYVNMIKSGIVDPTKVTRSALQNAASVSATFLTTEAAVAEIPQKEPAMPAPGMGMD 537          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH603_NITHX (60 kDa chaperonin 3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAGNPMDNSGY 301
            +AL  P++ IA+NAGV GS+V  KVL +    +G++A    Y D++A GIIDP KVVR  L+ A+SVA   + ++ +V E+  +EP PAMP G  M   G+
Sbjct:  445 KALEAPIRQIAENAGVEGSIVVGKVLENKTETFGFDAQKEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKEEPAPAMPGGGGMGGMGF 545          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 2
Query:    8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 286
            AL  PL  IA+NAGVNG+VV+E V S   ++ GYNAA G Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + A  AG  M
Sbjct:  446 ALTAPLMRIAENAGVNGAVVAENVKSKSFNE-GYNAANGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADMPEKKEAAAAGGGM 537          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 271
            +RAL  PL  IA N+GV GSV+ EKV S+D    GYN  TG YEDL+AAGI+DP  VVR  L++A S+A   L ++ VVVE  E + A P
Sbjct:  444 RRALEAPLNQIANNSGVEGSVIVEKVRSTD-FSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAVVVEKPEKKGAAP 532          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_BRASB (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 298
            +AL  P++ IA+NAGV GS+V  K+L   +  +G++A + +Y D++A GIIDP KVVR  L+ ASSVA   + ++ +V E+ KE  PAMPAG  M   G
Sbjct:  445 KALEAPVRQIAENAGVEGSLVVGKILEEKSETFGFDAQSEDYVDMVAKGIIDPAKVVRTALQDASSVAGLLVTTEAMVAELPKEAAPAMPAGGGMGGMG 543          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_THIDA (60 kDa chaperonin OS=Thiobacillus denitrificans (strain ATCC 25259) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSG 298
            RA+  PL+ I KN G   SVV  KVL  + + +GYNA T  Y D++A G++DPTKV R  L++A+S+A   L +DC+V ++ E + PAMP G  M + G
Sbjct:  445 RAIEEPLRQIVKNCGDEPSVVVNKVLEGEGN-FGYNAGTSEYGDMVAMGVLDPTKVTRTALQNAASIAGLMLTTDCMVADLPEDKAPAMPMGGGMGDMG 542          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_LACSS (60 kDa chaperonin OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            RAL  P++ IA NAG+ GSV+ EKV  S   + GYNAA GN+E+++ AGI+DPTKV R  L++A+SVA   L ++ VV +  E  PA  AG  MD S  G
Sbjct:  442 RALEEPVRQIATNAGLEGSVIVEKV-KSQPVEVGYNAANGNWENMIEAGILDPTKVTRSALQNAASVAALMLTTEAVVADKPEDNPAPAAG--MDPSAMG 538          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_CLONN (60 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            +RAL  P++ IA NAG+ GSV+ +K+ +S++   G++A  G Y ++M  GI+DP KV R  L++A+SVA TFL ++CVV EI E  P MPA   M   G
Sbjct:  442 RRALEEPVRQIAANAGLEGSVIIDKIKNSEDG-IGFDALEGEYTNMMQKGIVDPAKVTRSALQNAASVASTFLTTECVVAEIPEKNP-MPAAPGMGGMG 538          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_BIFLI (60 kDa chaperonin OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 274
            RA+  P+K IA+NAGV+G VV   V S  + + G+NAAT  YEDL+AAG+ DP KV R  L++A+S+A  FL ++ VV    EP+PA PA
Sbjct:  446 RAIEAPIKQIAENAGVSGDVVINTVRSLPDGE-GFNAATDTYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAVVANKPEPKPAAPA 534          
The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOBB9.383e-1750.0060 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBA9.383e-1750.0060 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH603_NITHX9.383e-1744.5560 kDa chaperonin 3 OS=Nitrobacter hamburgensis (s... [more]
CH602_SYNS39.383e-1748.3960 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH601_TRIEI9.383e-1753.3360 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_BRASB9.383e-1746.4660 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH60_THIDA1.225e-1645.4560 kDa chaperonin OS=Thiobacillus denitrificans (s... [more]
CH60_LACSS1.225e-1650.0060 kDa chaperonin OS=Lactobacillus sakei subsp. sa... [more]
CH60_CLONN1.225e-1646.4660 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]
CH60_BIFLI1.225e-1651.1160 kDa chaperonin OS=Bifidobacterium longum subsp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bp
TAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTG
TTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAA
TATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGG
AATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCT
CGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAG
GAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATA
TGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTC
TGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTT
CTTCTTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTG
AGGATAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACA
ATTGCAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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