FC873471

Overview
NameFC873471
Unique NameFC873471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 2.907e-62
Identity = 113/179 (63.13%), Postives = 138/179 (77.09%), Query Frame = 2
Query:   14 GAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            G G+M N   SRFS NGQ ++HFMG+STFS+YTVV ++S+AK+  +APLDKVCLLGC + TG GA  NTAKVE GS  AVFGLG +             SR+I ID++P KF  AK FG T+ VNPKDH KP++QV+V++TDGGVDYSFEC+GN++VMRAALE CHKGWGTSVI+GVAA
Sbjct:  120 GKGLMPNGT-SRFSCNGQVLFHFMGSSTFSEYTVVAEISLAKVHEKAPLDKVCLLGCAISTGYGAALNTAKVEAGSTCAVFGLGALGLAVIMGCQAAGASRIIAIDVNPDKFRIAKEFGATDLVNPKDHSKPVEQVLVEMTDGGVDYSFECVGNIAVMRAALEACHKGWGTSVIIGVAA 297          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 3.796e-62
Identity = 114/175 (65.14%), Postives = 134/175 (76.57%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            +M D  SRF+  G+ I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA  N AKVEPGS  AVFGLG V             +R+IG+DI+  KF RAK FG +E +NP+D  KPIQ+V++++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAA
Sbjct:  122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAALNAAKVEPGSTCAVFGLGGVGLAVIMGCKMAGAARIIGVDINKDKFARAKEFGASECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGISVVVGVAA 296          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 4.958e-62
Identity = 115/175 (65.71%), Postives = 134/175 (76.57%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            +M D  SRF+  G+PI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA  NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF +AK FG TE +NP+D  K IQ+V++++TDGGVD+SFECIGNV VMR+ALE  HKGWG SV+VGVAA
Sbjct:  122 LMPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATECINPQDFSKSIQEVLIEMTDGGVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAA 296          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 5.482e-61
Identity = 113/175 (64.57%), Postives = 134/175 (76.57%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            +M D  SRF+  G+ ++HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA  NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF +AK FG +E ++P+D  K IQ+V+V++TDGGVDYSFECIGNV VMR+ALE  HKGWG SV+VGVAA
Sbjct:  122 LMPDGTSRFTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGASECISPQDFSKSIQEVLVEMTDGGVDYSFECIGNVKVMRSALEAAHKGWGVSVVVGVAA 296          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 7.159e-61
Identity = 117/183 (63.93%), Postives = 135/183 (73.77%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R   G GVM  D  SRF+  G+ + HFMGTSTFS+YTVV D+S+ KI+  APLDKVCLLGCGV TG GA  NTAKVEPGS  AVFGLG V             SR+IGID++  KF +AK FG TE ++P D  KPIQ+V++++TDGGVDYSFECIGNV VMRAALE CHKGWG SVIVGVAA
Sbjct:  114 RVTQGKGVMP-DGTSRFTCKGKQVLHFMGTSTFSEYTVVADISLTKINASAPLDKVCLLGCGVSTGYGAALNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDLNKDKFAKAKEFGATECISPADFKKPIQEVLIEMTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAA 295          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH2_MAIZE (Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.721e-60
Identity = 106/175 (60.57%), Postives = 135/175 (77.14%), Query Frame = 2
Query:   20 GVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            GVM+ D KSRF+I+GQPI+HF+GTSTFS+YTV+H   +AKI+P+APLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IG+DI+P K+++AK FG TEFVNPKDHDKP+Q+V+++LT+GGVD S EC GNV+ M +A EC H GWG +V+VGV
Sbjct:  123 GVMIGDGKSRFTISGQPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGISTGLGATLNVAKPAKGSTVAIFGLGAVGLAAMEGARLAGASRIIGVDINPAKYEQAKKFGCTEFVNPKDHDKPVQEVLIELTNGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGV 297          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.553e-60
Identity = 107/178 (60.11%), Postives = 132/178 (74.16%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ND KSRFSI GQP++HF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK +PGS VA+FGLG V             SR+IG+D+   +F+ AK FGV EFVNPKDHDKP+QQV+ ++TDGGVD + EC G++  M +A EC H GWG +V+VGV
Sbjct:  121 TDRGVMINDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARMSGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKPVQQVIAEMTDGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGV 298          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.034e-59
Identity = 107/178 (60.11%), Postives = 133/178 (74.72%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ D KSRFSING+PIYHF+GTSTFS+YTV+H   VAKI+P+APLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IG+D++P +F+ AK FG TEFVNPKDH+KP+Q+V+ D+T+GGVD S EC GN++ M  A EC H GWG +V+VGV
Sbjct:  120 TVRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGISTGLGASINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEAKKFGCTEFVNPKDHNKPVQEVLADMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGV 297          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH1_ZEALU (Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurians GN=ADH1 PE=3 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.350e-59
Identity = 107/178 (60.11%), Postives = 133/178 (74.72%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ D KSRFSING+PIYHF+GTSTFS+YTV+H   VAKI+PQAPLDKVC+L CG+ TGLGA  N AK   GS VAVFGLG V             SR+IG+D++P +F+ A+ FG TEFVNPKDH+KP+Q+V+ ++T+GGVD S EC GN++ M  A EC H GWG +V+VGV
Sbjct:   47 TDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGISTGLGASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEARKFGCTEFVNPKDHNKPVQEVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGV 224          
BLAST of FC873471 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 2.303e-59
Identity = 107/178 (60.11%), Postives = 132/178 (74.16%), Query Frame = 2
Query:   11 TGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 544
            T  GVM+ND KSRFSING PIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK   GS VA+FGLG V             SR+IG+D++  +F++AK FGVTEFVNPKD+ KP+Q+V+ ++TDGGVD S EC G++  M +A EC H GWG +V+VGV
Sbjct:  121 TDRGVMLNDGKSRFSINGNPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGASLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGV 298          
The following BLAST results are available for this feature:
BLAST of FC873471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADHL_GADMO2.907e-6263.13Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADHX_BOVIN3.796e-6265.14Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADHX_RAT4.958e-6265.71Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADHX_MOUSE5.482e-6164.57Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
ADHX_UROHA7.159e-6163.93Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
ADH2_MAIZE2.721e-6060.57Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 S... [more]
ADH1_TRIRP3.553e-6060.11Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
ADH1_PENAM1.034e-5960.11Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]
ADH1_ZEALU1.350e-5960.11Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurian... [more]
ADH2_SOLLC2.303e-5960.11Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CE02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873471 ID=FC873471; Name=FC873471; organism=Citrus clementina; type=EST; length=552bp
TAGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTT
TCTCGATAAATGGACAGCCTATCTATCACTTCATGGGAACCTCAACATTT
AGCCAGTACACAGTTGTGCATGATGTTAGTGTTGCAAAGATTGACCCACA
AGCTCCTTTGGACAAAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTC
TTGGAGCAGTTTGGAACACTGCAAAAGTAGAGCCGGGTTCTATAGTTGCT
GTTTTTGGCCTTGGGACTGTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGC
AGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCGAAAAAGTTTG
ATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGACCAT
GACAAACCCATTCAGCAGGTCGTTGTCGATCTCACGGATGGTGGTGTTGA
CTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTTTGG
AATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCTGCA
TC
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